BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496377
Length=2057
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62030.1 | Symbols: | diphthamide synthesis DPH2 family pro... 2627 0.0
> AT5G62030.1 | Symbols: | diphthamide synthesis DPH2 family protein
| chr5:24918479-24920876 FORWARD LENGTH=2197
Length=2197
Score = 2627 bits (1422), Expect = 0.0
Identities = 1785/1950 (92%), Gaps = 66/1950 (3%)
Strand=Plus/Plus
Query 93 ATCCGGTTAGATTATAAAATAAAATGGATTGGGGTTTGTAACACCGGTTAGACCCTAAAC 152
|||||||||||||||| |||||||| |||| || || |||||||||||||||| |||||
Sbjct 157 ATCCGGTTAGATTATACAATAAAATTGATT--GGCTTATAACACCGGTTAGACCTTAAAC 214
Query 153 CCTTTCGTGACTTTATTA-TCGTTCTCTGCGCCGCGTTCTCTTCTCTATCGATTAAGCAA 211
||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 215 CCTTTCGTGAC-TTATTAGTTGGTCTCTGCGCCGCGTTCTCTTCTCTATCGATTAAGCAA 273
Query 212 AATCGACCCTCTTCGATTTTTATTTT-CATCTCTGAGCAATAAATTTTGGGGAttt--tt 268
||||||||||||||||||||| |||| ||||||||||| | ||| | | | | ||| |
Sbjct 274 AATCGACCCTCTTCGATTTTTTTTTTCCATCTCTGAGC-A-AAA-TATCGTGCTTTCATC 330
Query 269 tttttGCATCTTTC-TCTT-ATGTTTC-AGGCCAAAGTATGGAACTTTCTGATCTAAACA 325
| || | || | | |||| | || | ||||||||||||||| |||||||||| |||||
Sbjct 331 ATCTT-CGTC-TGCTTCTTCTTCTTCCAAGGCCAAAGTATGGAGCTTTCTGATCCAAACA 388
Query 326 ATGGGAAGACCAACAAACCAAAGCAACCTCCAAAACGTTTCATCAAGAACCAAATCCCTG 385
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 ATGGCAAGACCAACAAACCAAAGCAACCTCCAAAACGTTTCATCAAGAACCAAATCCCTG 448
Query 386 AATCAATCCTTGGTGATGCATCCCTCAACGCTGCTATCTCAATCCTT-CCTTCAATTTAC 444
| |||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 449 ATTCAATCCTCGGTGATGCATCCCTCAACGCTGCTATCTCCAT-CTTACCTTCAATTTAC 507
Query 445 CAGTTTGAGGTCCATAAATGTGTTTGGCGTATCAAATCATCAAACGCTAAACGCATAGCT 504
|| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 508 CATTTTGAAGTCCATAAATGTGTGTGGCGTATCAAAACATCAAACGCTAAACGCATAGCT 567
Query 505 CTGCAGCTTCCAGAGGGTCTTCTTATGTATGCTCTCACACTCTCTGACATCTTCACATCT 564
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 568 CTGCAGCTTCCAGAGGGTCTTCTTATGTACGCTCTTACACTCTCTGATATCTTCACATCT 627
Query 565 TTTGCTGGAGCCACTCACTGTTTTGTCCTCGGTGATGTTACTTATGGAGCTTGCTGTGTT 624
||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 628 TTTGCTGGAGCTTCTCACTGTTTTGTACTCGGTGATGTTACTTATGGAGCTTGTTGTGTT 687
Query 625 GATGATTTCTCTGCCTGTGCTCTTGGTGCTGACTTGCTTATTCACTATGGACATAGTTGT 684
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 688 GATGATTTCTCTGCTTGTGCGCTTGGTGCTGACTTGCTTATTCACTATGGACATAGTTGT 747
Query 685 CTTGTCCCTATTGACTCTACAAAAATCCCTTGCCTTTATGTCTTTGTTGAGATTCAGATT 744
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 748 CTTGTCCCTATCGACTCTACAAAAATCCCTTGCCTTTATGTTTTTGTTGAGATCCAGATA 807
Query 745 GATGTCAAATGTC-TGTTGAACACTATCCA-CATGAATCTCGCGAGTGATGCCAAGAACA 802
||||||||||| | ||||||||||||| || | |||||||||||||||||| |||||||
Sbjct 808 GATGTCAAATG-CTTGTTGAACACTATACATC-TGAATCTCGCGAGTGATGTTAAGAACA 865
Query 803 TCATTCTCGCAGGCACGATTCAGTTTACTTCGGCGATTAGAGCTGTGAAACCAGAGTTAG 862
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 866 TCATTCTTGCAGGCACGATTCAGTTCACTTCGGCGATTAGAGCTGTGAAACCAGAGTTGG 925
Query 863 AGAAGCAAGGGTTCAATGTTTTGATCCCTCAGTCAAAGCCTCTTTCGGCTGGTGAAGTCC 922
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 926 AGAAGCAAGGGTTCAATGTTTTGATCCCTCAGTCAAAGCCTCTATCTGCTGGTGAAGTCC 985
Query 923 TTGGATGTACAGCTCCTAAGATTAAGACGGTTGACGATTGTAAAGACCAAGTACTGGTGT 982
|||| ||||||||||| ||| | ||||||||||| ||||||||||||||||||||||| |
Sbjct 986 TTGGCTGTACAGCTCCCAAGGTGAAGACGGTTGAGGATTGTAAAGACCAAGTACTGGTCT 1045
Query 983 TTGTAGCTGACGGGAGATTTCATCTAGAAGCATTCATGATTGCCAATCCGAAAATCAAGG 1042
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1046 TTGTAGCTGATGGGAGATTTCATCTAGAAGCATTCATGATAGCCAATCCAAAAATCAAGG 1105
Query 1043 CGTTTAGGTATGATCCATATCTTGGCAAGCTGTTTTTAGAGGAGTATGATCACAAGGGAA 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1106 CGTTTAGGTATGATCCATATCTTGGCAAGCTGTTTTTAGAGGAGTATGATCATAAGGGAA 1165
Query 1103 TGAGGGAGACGAGAAGGAGAGCGATTGCAAGGGCCAGGGATGCTAAAACTTGGGGGATCG 1162
||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1166 TGAGGGAGACGAGAATGAGAGCGATTGCACGGGCCAGGGAGGCTAAAACTTGGGGGATCG 1225
Query 1163 TGTTGGGGACATTGGGAAGGCAAGGAAATCCTAAGATTCTCGAGAGATTAGAGAAGAAAA 1222
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1226 TGTTGGGGACATTGGGAAGGCAAGGAAATCCTAAGATTCTTGAGAGATTAGAGAAGAAAA 1285
Query 1223 TGGTGGAGAAAGGGATAGATAGCACGGTTGTTTTAATGTCGGAACTTAGCCCCACTAGAG 1282
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1286 TGATGGAGAAAGGGATAGATAGCACAGTTGTTTTAATGTCGGAACTTAGTCCCACTAGAG 1345
Query 1283 TGGCATTGTTTGAAGACTCGGTGGATGCTTGGGTCCAAATAGCATGCCCAAGACTTTCTA 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TGGCATTGTTTGAAGACTCGGTGGATGCTTGGGTCCAAATAGCATGCCCAAGACTTTCTA 1405
Query 1343 TTGATTGGGGTGAAGCGTTTCTTAAGCCGCTTCTGACAACTTTTGAGGCTGAGATTGCTC 1402
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1406 TTGATTGGGGTGAAGCGTTTCTTAAGCCGCTTCTGACGACTTTTGAGGCTGAGATTGCTC 1465
Query 1403 TAGGATTCATCCGCGGTTGGTGGGAGAATGGTTCTTCGAGTAGAGTAGATTCTTCGTCTG 1462
|||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||| ||||
Sbjct 1466 TAGGATTCATCCGCGGCTGGTGGGAGAATGATTCTTCTAGTAGAGTAAATTCTTCATCTG 1525
Query 1463 GCTGTTGCAAAGAGGACAAAGAAACAAGCTGTGCGTGTAAAAATGAAAAGGTGGAAGATG 1522
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1526 GCTGTTGCAAAGAGGACAAAGAAACAAGCTGTGCGTGTAAAAATGAGAACGTGAAAGATG 1585
Query 1523 ATAAGAAAGACAATGATGGGGCACTCGATGGAGACTATCCAATGGATTATTATGCACAAG 1582
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1586 ACAAGAAAGACAATGATGGGGCACTCGATGGAGACTATCCAATGGATTACTATGCACAAG 1645
Query 1583 AAGGCGGAGAATGGAACTCTTCATATCTCAAGAAGTCGTCTCGCCCCATTCGAAGAAACC 1642
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1646 AAGGTGGAGAATGGAACTCTTCATATCTCAAGAAGTCATCTCGTCCCATTCGAAGAAACC 1705
Query 1643 CTTTACCTTCTTCTGTAGTTTAGAATGCTGACAGAGTAAATT-A-----------T-T-A 1688
|||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1706 CTTTACCTTCTTCTGTAGTTTAGAATGCTGACAGAGTAAATTCAACCACAGCAGGTATTA 1765
Query 1689 CCAAGTCAAAAAGGCAAATGGGTTTTGATGATGTTCCTGGTATTTTCGGATATGTGTTGA 1748
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1766 CCAAGTCAAAAAGGCAAATGGGTTTTGATGATGTTCCTGGTATTTTCGGATG-G-GTTGA 1823
Query 1749 TTTGCTTGTATCGTAATCTTGATGCTGAAGAATGTTAGTTACTTGGGGAGGTCTTGAAGT 1808
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1824 TTTGCTTGTATCGTAATCTTCATGCTGAAGAATGTTA----CTTGGGGAGGTCTTGAAGC 1879
Query 1809 GAAACCG-AGA--ATT--G-GA------CAGAACATGAAGGCTTG-AAGAGGGAAGACTC 1855
|||||| ||| ||| | || || ||||||||| ||| ||||| ||||||||
Sbjct 1880 GAAACCTTAGACTATTACGAGAGTTTGACATAACATGAAGA-TTGGAAGAGTGAAGACTC 1938
Query 1856 ATGCTCAGTTTTGATACAA-GCGGTGAGGATTAAAACGGCTGTTTGCAGAGAAGCTACAA 1914
|| || |||||||||||| ||||||||||||||| || ||||||||||||||||||| |
Sbjct 1939 CTGGTCTGTTTTGATACAAAGCGGTGAGGATTAAA-CG-CTGTTTGCAGAGAAGCTACTA 1996
Query 1915 CACTTGTTTACTTTTGTCTTCTC-T-A-TT-TATGGGA-GG-TTACAACGGAATGGTGAG 1968
|||||||||| |||||||||||| | | || | | | | || ||||||| ||||||||
Sbjct 1997 CACTTGTTTATTTTTGTCTTCTCATTACTTGTTTTG-ATGGGTTACAACAAAATGGTGAT 2055
Query 1969 TGAAGTGAAAAACAGAGCCCTGTTTATGTG 1998
||||||||||| ||||||||||||||||||
Sbjct 2056 TGAAGTGAAAA-CAGAGCCCTGTTTATGTG 2084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101957306895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5