BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496379
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62050.1 | Symbols: OXA1, ATOXA1, OXA1AT | homolog of yeast ... 2660 0.0
> AT5G62050.1 | Symbols: OXA1, ATOXA1, OXA1AT | homolog of yeast
oxidase assembly 1 (OXA1) | chr5:24923774-24927314 REVERSE
LENGTH=1713
Length=1713
Score = 2660 bits (1440), Expect = 0.0
Identities = 1607/1687 (95%), Gaps = 13/1687 (1%)
Strand=Plus/Plus
Query 1 AACTTGGCCGTTCTAAAACCCATTCACCGTCTCTGTTTAGTTCGCCGTGATTCATAGTCT 60
||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 11 AACTTAGCCATTCTAAAACCCATTCACCGTCTCTGTTTCGTTCGCCGTGATTCATAGTCG 70
Query 61 TCTCATCTCACCGTCA-C-T----GTCGCCTTCTTCCATTGCCAGGATCTTGTTTAGATT 114
|||| ||||||||||| | | ||| |||||||||||| ||||||||||||||||||
Sbjct 71 TCTCGTCTCACCGTCACCATCACCGTCTTCTTCTTCCATTGACAGGATCTTGTTTAGATT 130
Query 115 CTGCAATGGCTTTCAGGCGAACCTTAGCTATAAGGTCCACACTCTTCGCTCGTCGGAGCC 174
|||||||||||||||||| ||| ||| |||||||||||| || ||||||||||| | ||
Sbjct 131 CTGCAATGGCTTTCAGGCAAACTTTATCTATAAGGTCCAGGCTTTTCGCTCGTCGTAACC 190
Query 175 AACCA-TCTTATCATATTATCCCTCTTGCGAATGATCATGAAAGGGATTCATTCTCTCAA 233
||||| | ||||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 191 AACCAGT-TTATCATATTATCCCTCGTGAGAGTGATCATGAAAGGGATTCATTCTGTCAA 249
Query 234 GAAACATCTCAAAGAAGTTACCATAGCTTCCTTCACCAAAGATCCGTTAACAACTCAGAT 293
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 250 GAAACATCTCAGAGAAGTTACCATAGCTTTCTTCACCAAAGATCCGTTAACAATTCTGAT 309
Query 294 TTCTCCAAAGTTTCTGGAGGAGGCTTATATTTACCTATGGCTCCTACGTCTGCTTTCGCT 353
||||||||||||||||||||| ||||| |||| ||| | ||||| ||||||| ||| |||
Sbjct 310 TTCTCCAAAGTTTCTGGAGGAAGCTTACATTTGCCTCTTGCTCCCACGTCTGGTTTTGCT 369
Query 354 TTCTATCGTTATATGTCAACTGCACCTGGTGTCGGGTCAGAGAAGATTGGTGTGATGTCT 413
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 370 TTCTATCGTTATATGTCAAGTGCACCTGGTGTTGGTTCAGAGAAGATTGGTGTGATGTCT 429
Query 414 GACATTGCAGAAGTCATAACCGACTCAACATTGCAAGATGTGCCAGCTCAGGCTGCTGCT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GACATTGCAGAAGTCATAACCGACTCAACATTGCAAGATGTGCCAGCTCAGGCTGCTGCT 489
Query 474 GCAGTCAGTGAAGTTACACTTGCAGCTGCTGACTCTTTCTTCCCTATCGCGGCCCTTCAG 533
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GCTGTCAGTGAAGTTACACTTGCAGCTGCTGACTCTTTCTTCCCTATCGCGGCCCTTCAG 549
Query 534 CATTGCATTGATATGGTGCATTCATTCACAGGATTTGGGTGGTGGGCATCCATTGTTGTA 593
|| |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct 550 CAGTGCATTGATATGGTGCATACATTCACAGGCTTTGAGTGGTGGGCATCCATTGTTGTA 609
Query 594 GCAACCATTTTGATCCGATCATCAACAGTTCCTCTCTTGATCAAACAAATGAAAGACACA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GCAACCATTTTGATCCGATCATCAACAGTTCCTCTCTTGATCAAACAAATGAAAGACACA 669
Query 654 ACCAAGTTAGCGCTGATGAGGCCACGGTTGGAGTCCATCCGGGAGGAAATGCAAAACAAG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACCAAGTTAGCGCTGATGAGGCCACGGTTGGAGTCCATCCGGGAGGAAATGCAAAACAAG 729
Query 714 GGAATGGACTCGGTTACAATGGCAGAAGGTCaaaaaaaGATGAAGAATTTGTTTAAAGAA 773
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GGAATGGACTCGGTTACGATGGCAGAAGGTCAAAAAAAGATGAAGAATTTGTTTAAAGAA 789
Query 774 TATGGTGTCACTCCATTCACCCCAATGAAAGGAATGTTTATTCAGGGACCTCTGTTCATC 833
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 790 TATGGTGTCACTCCATTCACCCCAATGAAAGGGATGTTTATTCAGGGACCGCTGTTCATC 849
Query 834 TGCTTTTTCCTTGCTATTCGAAATATGGCAGAGAAAGTGCCTTCATTCCAAACAGGAGGT 893
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 850 TGCTTTTTCCTTGCTATTCGAAATATGGCAGAGAAGGTACCTTCATTCCAAACAGGAGGT 909
Query 894 GCATTATGGTTTACCGATCTAACAACTCCCGACAGCTTATACATCTTACCAGTTATAACA 953
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 910 GCATTATGGTTTACCGATCTAACAACTCCCGACAGCTTATACATCTTGCCGGTTATAACA 969
Query 954 GGATTGACATTCTTGATAACCGTTGAGTGTAATGCACAAGAAGGCATGGAAGGGAATCCG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GGATTGACATTCTTGATAACCGTTGAGTGTAATGCACAAGAAGGCATGGAAGGGAATCCG 1029
Query 1014 ATGGCTGGCACAGTAAAAAATGTTTGTCGGGGTTTTGCTCTCCTCACAGTCCCGATGACA 1073
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1030 ATGGCTGGCACTGTAAAAACTGTTTGTCGGGTTTTTGCTCTCCTCACAGTCCCGATGACA 1089
Query 1074 ATGAGTTTTCCACAGGCCATATTTTGTTACTGGATCACATCCAACCTGTTCTCGCTCATG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1090 ATGAGTTTTCCACAGGCCATATTTTGTTACTGGATCACATCCAACCTGTTCTCTCTCATG 1149
Query 1134 TATGGACTTGTGATTAAA-CGTCCTCAAGTGAAGAAGATGTTACGCATACCTGATCTGCC 1192
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TATGGACTTGTGAT-AAAGCGTCCTCAAGTGAAGAAGATGTTACGCATACCTGATCTGCC 1208
Query 1193 TCCACCTCCTCCAGGTCAACAACCTTCATTTGACCTGTTTTCAGCTCTCAAGAAAATGAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TCCACCTCCTCCAGGTCAACAACCTTCATTTGACCTGTTTTCAGCTCTCAAGAAAATGAA 1268
Query 1253 AGCCATGACACAGGACCATACACAGAACCAGACATTACCACCTTCGCCAGTAAACCCGAG 1312
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1269 AGCCATGACACAGGACCATACACAGAACCAGATAGAACCACCTTCGCCAGTAAACCCGAG 1328
Query 1313 GATCTCTTCA-CAATCGCTGAGTCCTGTTAGTAAGAGGCTCAAGGCTTTGGAGAGCCAAG 1371
| | || ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GCTTTCCTCAACA-TCGCTGAGTCCTGTTAGTAAGAGGCTCAAGGCTTTGGAGAGCCAAG 1387
Query 1372 TGAAGGGAAGGAAGAAGAATAGCAGCAAGAAGAAGTGATTCAAAATGGTGCATACTATTT 1431
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1388 TAAAGGGAAGGAAGAAGAATAGCAGCAAGAAGAAGTGATTTAAAACGGTGCATACTATTT 1447
Query 1432 TTGTTA-GAGGGCCAAACGaaaaaaaTAATAAAGCTTTTGAGTCAAAAGTGAACACAGAT 1490
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1448 TTGTTAAGAGGGCCAAACGAAAAAAATAATAAAGCTTTTGAGTCGAAAGTGAACACAGAA 1507
Query 1491 TTTTCTCACTGATGAAACTACTCTGTGAGCTAAAAAGCTGGAGGCAGCTATTGTAAGTTT 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 TTTTCTCACTGATGAAACTACTCTGTGAGCTAAAAAGCTGGAGGCAGCTATTGTAAGTTT 1567
Query 1551 GTTTTGACCAATTAGAGAATAGAATATTGTTTTTATAGAAACATTTTGGATAACATATAC 1610
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1568 GTTTTGACCAATTATAGAATAGAAGATTGTTTTTATAGAAACATTTTGGATAACATATAC 1627
Query 1611 TCTTTTATCTTGTTAAGTAACAGAACTTGAACAAAATTGGATCTTTTTGAACATGTTGGT 1670
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1628 TTTTTTATCTTGTTAAGTAACAGAACTTGAACAACATTGGATCTTTTTGAACATCTTGGT 1687
Query 1671 AATGGTT 1677
|||||||
Sbjct 1688 AATGGTT 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5