BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496381
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62070.1 | Symbols: IQD23 | IQ-domain 23 | chr5:24929919-249... 1977 0.0
> AT5G62070.1 | Symbols: IQD23 | IQ-domain 23 | chr5:24929919-24932576
REVERSE LENGTH=1475
Length=1475
Score = 1977 bits (1070), Expect = 0.0
Identities = 1317/1431 (92%), Gaps = 37/1431 (3%)
Strand=Plus/Plus
Query 23 TCTCAGCA-ATTAAATGAAGTGTAAATCCACCGGAGAAATCTCTGATAAAACTTCTCCGA 81
|||||| | ||||||| |||||| |||| ||||||||| |||| || ||||| || ||||
Sbjct 47 TCTCAG-ATATTAAATAAAGTGTTAATCAACCGGAGAACTCTCCGACAAAACCTCGCCGA 105
Query 82 CGATTTTCCGACGATGAACGATGGGCTTTTTTGGGAGACTGTTCGGGAGT---AAAAAGT 138
|||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct 106 CGATTTTCCGACGATGAAAGATGGGCTTTTTCGGGAGACTGTTCGGGAGTAAAAAAAAGT 165
Query 139 CTGATAAATCAGCTCCGTCGAGAGATAAACGGAGGTGGAGCTTCACTACTAGATCTTCAA 198
|||||||| | ||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 166 CTGATAAAGCTGCTTCGTCGAGAGATAAACGGAGGTGGAGCTTCACCACCAGATCTTCAA 225
Query 199 ATTCCAGCAAGAGAGCTCCGGCGGCGAAGAC-G-TT-TGTGGATGAGCAAAACGGTTTGG 255
|||||||||||||||||||||||| || | | | || |||| ||||||||| |||||||
Sbjct 226 ATTCCAGCAAGAGAGCTCCGGCGGTGACGTCGGCTTCGGTGGTTGAGCAAAATGGTTTGG 285
Query 256 ATGCCGACAAACATGCAATAGCCGTGGCTGCTGCGACCGCCGCGGTGGCTGAAGCAGCTC 315
|||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 286 ATGCTGACAAACATGCGATAGCTGTGGCTGCTGCGACAGCCGCGGTGGCGGAAGCAGCTC 345
Query 316 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACT--C-A-C---AA--GCGGGAGAA 366
||||||||||||||||||||||||||||||||||||| | | | || |||||||||
Sbjct 346 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACTAACAAGCGGAAACGGCGGGAGAA 405
Query 367 ATGGCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATCGGAAGAAGTAACCGTCGGTGGG 426
| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 406 ACGTCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATAGGAAGAAGTAACCGTCGGTGGG 465
Query 427 CTCAGGAGAATCTCGCGGCCAGGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCAAGGA 486
||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 466 CTCAGGAGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCGAGGA 525
Query 487 GAGCATTAAGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTTAGAGGACACATAG 546
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 526 GAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAG 585
Query 547 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTGGTTCGTCTCCAATCTC 606
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 586 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTTGTTCGTCTTCAATCTC 645
Query 607 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCAACCG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 646 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCCACCG 705
Query 667 CTCTATTGTTCCCATCTTCCTCATCTTCTCCACGTTCTCTCCACACGCGCTGCGTTTCAA 726
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 706 CTCTTTTGTTCCCATCTTCCTCGTCTTCTCCACGTTCTCTTCACACGCGCTGCGTTTCAA 765
Query 727 GCGCTGAAGTCATCTCTATGGACCACCGTGGAGGCTCTAAACGGTTAGATTGGCAAGCTG 786
||||||||||| |||| | |||||||||||||||||||| |||||||||||||| || |
Sbjct 766 ACGCTGAAGTCAGCTCTCTTGACCACCGTGGAGGCTCTAAGCGGTTAGATTGGCAGGCGG 825
Query 787 AGGAAGGCGAAGATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCGTTATCATC 846
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 826 AGGAAAGCGAAAATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCATTATCATC 885
Query 847 CGAAACCGCTACGTTCAGAGAGAAACAATGAGTCTCCAAGGAAAAGACAACAATCTCTT- 905
| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 886 CCAAACCGTTACGTTCAGAGAGAAACAATGAGTCTCCGAGGAAACGACAACAATCT-TTG 944
Query 906 TTGGGTCCGAGAAGTACAGAGAACAGTCCTCAAGTTGGGTCTAGTGGGTCGAGAAGAAGA 965
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 945 TTGGGTCCGAGAAGTACAGAGAATAGTCCTCAAGTTGGTTCTAGTGGGTCAAGAAGAAGA 1004
Query 966 ACTCCTTTTACGCCAACGTCAAGAAGTGAGTATTCTTGGGGATGTAATAACTATTACTAC 1025
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1005 ACTCCTTTTACGCCGACGTCAAGAAGCGAGTATTCTTGGGGATGTAATAACTATTACTAC 1064
Query 1026 TCGGGTTACCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTCCGGTCA 1085
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1065 TCGGGTTATCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTTCGGTCA 1124
Query 1086 CAGAGCGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1145
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CAAAGTGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1184
Query 1146 GTTCAGGGACAGTATTACTACTACACGGCGGTAGCAGAAGAGAGTTTGGATGTTGGAAGC 1205
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1185 GTTCAGGGACAGTATTACTACTACACAGCGGTAGAAGAAGAGAGTTTGGATGTTGGAAGC 1244
Query 1206 CCCGGTTACTATGGAGGAGGAGT------TTCTGATCGATTGAATCGGAACCAAAGTGCA 1259
| |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1245 GCTGGTTACTACGGAGGAGGAGGAGGCGATTCTGATCGATTGAATCGGAACCAAAGTGCG 1304
Query 1260 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTATGATTCTCTTT-TCTT-TTT--- 1314
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 1305 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTGTGATTCTCTTTCTCTTCTTTTTT 1364
Query 1315 --G-TTTGAGTTTGGTAATTTTCCAGGAGAGACAAGT-TGTAAC--TGGATGTGTAAATT 1368
| |||||||||||||||||||||| ||||| |||| | |||| ||||||||||||||
Sbjct 1365 TTGGTTTGAGTTTGGTAATTTTCCAGAAGAGATAAGTAT-TAACACTGGATGTGTAAATT 1423
Query 1369 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACATAACTATGTTCT 1419
||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1424 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACACCACTCTGTTCT 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5