BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496383

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62080.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   586    7e-167


> AT5G62080.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:24933471-24934445 
REVERSE LENGTH=660
Length=660

 Score =  586 bits (317),  Expect = 7e-167
 Identities = 493/569 (87%), Gaps = 47/569 (8%)
 Strand=Plus/Plus

Query  1    ATATAGATAGAACTACATCAAAATATATATAAAGAAAACAAGCTTAT-C----C----AT  51
            ||||| ||||||||||||| | |||| |||  || |||||| ||||| |    |    ||
Sbjct  1    ATATACATAGAACTACATC-AGATATCTAT--AG-AAACAAACTTATCCATGGCAATAAT  56

Query  52   GGCATCGTTCAAGTCTTTGGCAGCCGTTCTCAGTGTTCTTTTTCTAGCCATGACTGCTAT  111
            |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct  57   GGCATCGTTCAAGTCTTTCGCAGCCGTTCTCAGTGTCCTTTTTCTTGCCATGACTGCTAT  116

Query  112  AGAACCGGTGGTTCAAGCCCAAGAGTGTGGCAACGATCTAGCAAATGTGCAGGTGTGTGC  171
            |||| |||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct  117  AGAAACGGTAGTTCAAGCCCAAGAATGTGGCAACGATCTAGCAAATGTGCAGGTATGCGC  176

Query  172  CGCCATGGTGCTGCCCGGTTCAGGCAGACCGAATTCAGAGTGTTGCGCCGCACTTCAATC  231
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  177  CGCCATGGTGCTGCCCGGTTCAGGCAGACCAAATTCAGAGTGTTGCGCCGCACTTCAATC  236

Query  232  TACTAATAGAGATTGTCTATGCAACGCTCTCCGTGCAGCCACCTCTCTTCCTTCGCTTTG  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  TACTAATAGAGATTGTCTATGCAACGCTCTCCGTGCAGCCACCTCTCTTCCTTCGCTTTG  296

Query  292  TAACCTTCCTCCTGTGGATTGCGGTACGGATTTACTTTACTTCTAAGTATAAATGCTTAG  351
            |||||||||||||||||||||   |  || |  | |  |     || |      ||||||
Sbjct  297  TAACCTTCCTCCTGTGGATTG---T--GG-T--A-T--A-----AA-T------GCTTAG  333

Query  352  TTAAGCACTTGAGCTAAGTCAAGTCCGAGATGATCAAGGAAAACGGGAAAAATAAAGAAT  411
            ||||||  |  | | | ||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct  334  TTAAGC--T--A-CGA-GTCAATTCCAAGATGATCAAGGAAAACGGGAAAA-TAAAGAAT  386

Query  412  AATGGGAACTATTCTAGTTTTATGtttttttttCTCACTTCTGCCTCTTTTATTATAATA  471
            |||| ||| ||||| ||| ||||||||||| |||| |||||||| | ||  | |||||||
Sbjct  387  AATGAGAAATATTCCAGTCTTATGTTTTTTCTTCTAACTTCTGC-T-TT--ACTATAATA  442

Query  472  AAGTTCTGGTAGCTTTGCTTAGAAATTTAGATACTACTAGTGTAATAAAAAGCTTTGCTA  531
            ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  443  AAGTTCTAGTAGTTTTGCTTAGAAATTTAGATACTACTAGTATAATAAAAAGCTTTGATA  502

Query  532  ATTATGAGAATAAAACCTTCCCTGTCTGA  560
            |||||||||||||||| ||||| ||||||
Sbjct  503  ATTATGAGAATAAAACATTCCCGGTCTGA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26875268645


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5