BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496387
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62100.1 | Symbols: ATBAG2, BAG2 | BCL-2-associated athanoge... 926 0.0
> AT5G62100.1 | Symbols: ATBAG2, BAG2 | BCL-2-associated athanogene
2 | chr5:24940396-24941955 FORWARD LENGTH=1152
Length=1152
Score = 926 bits (501), Expect = 0.0
Identities = 543/563 (96%), Gaps = 4/563 (1%)
Strand=Plus/Plus
Query 22 ACAGCTTCCGGCGACGGTGAATTGGAGCTCCGACCTGGAGGAATGGTTGTACA-AAAACG 80
||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 106 ACAACTTCCGGCGACGGTGAAATGGAGCTCCGACCTGGAGGAATGGTTGTACAGAAAA-G 164
Query 81 AACGGAACATAGCTCTAGCGTGCCACGTGTCATTCGGGTTCGGGTCAAATACGGGTCGGT 140
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 165 GACGGATCATAGCTCAAGCGTGCCACGTGGCATTCGGGTTCGGGTCAAATACGGGTCGGT 224
Query 141 CCATCACGAGATCAGTATCAACTCTCAATCTACTTTCGGGGAATTAAAGAAGATATTGTC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CCATCACGAGATCAGTATCAACTCTCAATCTACTTTCGGGGAATTAAAGAAGATATTGTC 284
Query 201 TGGTGCGACAGGAGTTCATCATCAAGACATGAAGATTATATACAAAGACAAAGAAAGAGA 260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 285 TGGTGCGACAGGAGTTCATCATCAAGACATGCAGATTATATACAAAGACAAAGAAAGAGA 344
Query 261 TTCTAAGATGTTTCTTGATCTTTCTGGTGTCAAAGATCGTTCGAAACTTATTCTTAAAGA 320
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 345 CTCAAAGATGTTTCTTGATCTTTCTGGTGTCAAAGATCGTTCGAAACTTATTCTTATAGA 404
Query 321 AGATCCGATTTCTCAGGAGAAACGTCTCCTTGAGTTGAGGAAAATCGCCGCCAAAGAGAA 380
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 405 AGATCCCATTTCTCAGGAGAAACGTCTCCTTGAGTTGAGGAAAATCGCCACCAAAGAGAA 464
Query 381 ATCCA-CTAAAGCAATCTCTGATATTAGCTTCCAAGTCGAAAGACTCGCTGGACAACTGT 439
||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 465 ATC-ATCTAAAGCAATCTCTGATATTAGTTTCCAAGTCGAAAGACTCGCCGGACAACTGT 523
Query 440 CGGCGTTTGATACAGTGATTGGTAAAGGAGGGAAAGTTGAAGAGAAGAATCTTGAGAATT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CGGCGTTTGATACAGTGATTGGTAAAGGAGGGAAAGTTGAAGAGAAGAATCTTGAGAATT 583
Query 500 TGATGGAGATGTTGATGAATCAATTGGTGAAACTCGATGCCATCTCAGGTGATGGAGACG 559
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 584 TGATGGAGATGTTGATGAATCAATTGGTCAAGCTCGATGCCATCTCAGGTGATGGAGACG 643
Query 560 TTAAATTGAAGAAGAAGATGCAG 582
|||||||||||||||||||||||
Sbjct 644 TTAAATTGAAGAAGAAGATGCAG 666
Score = 348 bits (188), Expect = 7e-95
Identities = 336/402 (84%), Gaps = 32/402 (8%)
Strand=Plus/Plus
Query 581 AGGAGGAAAGATTACACAAGTATATTGAGGCTCTCGATTTGTTGAATATCAAGAACT--- 637
||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 698 AGGAGGAAAGATTACACAAGTATGTTGAGGCTCTCGACTTGTTGAAGATCAAGAACTCAA 757
Query 638 --CAA-CGCAACCG----C-AA-CCTCAATACAAGGAACGAGATTTGCTCACATTTGATG 688
||| ||||| || | || || |||||||||||||| || |||| |||||| | |
Sbjct 758 GGCAACCGCAAACGAAACCAAAGCCGCAATACAAGGAACGGGAAATGCTGACATTTTACG 817
Query 689 AGGAAGCGTCAAGGAAACCGACGATCTCCTCATCAAGTCCTCCGGTGATCATAACAACGA 748
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 818 AGGAGGCGTCAAGGAAACCGACGGCCTCCTCATCAAGTCCTCCGGTGATCATAACAACAA 877
Query 749 GATGGGAAACGTTTGATTCTAATTCCGCCTCCACGACCACGGACACTGTACAAACCGTTA 808
||||||||||||||||||||| ||| ||||||||| || || | ||||| ||||||
Sbjct 878 GATGGGAAACGTTTGATTCTAGTTCAGCCTCCACG-GCA---AC-C-CTACAACCCGTTA 931
Query 809 AACCGGTTCACCCAAAATTTAAATGGGAATTATTCAATTAATTAAGATATATATACACAT 868
||||||||||||||||||||||||||||||||||||||||| | || |||| | ||
Sbjct 932 GACCGGTTCACCCAAAATTTAAATGGGAATTATTCAATTAAT-ATC-TAGATATT-A-AT 987
Query 869 TACACGATAATATATTACACTATAATTAGTT---A--TTTCCTGTAAGTTGTAACATATG 923
|||||||||||||| || |||||| |||||| | ||| |||||| |||||||||||
Sbjct 988 TACACGATAATATAATATACTATACTTAGTTTTCAGATTTATTGTAAGGTGTAACATATG 1047
Query 924 TGAtttttttttGGTCTAGC---ATATGATCTGTGATTGGTC 962
||||| ||||| | ||||| ||||||| |||||||||||
Sbjct 1048 TGATTATTTTT-G-TCTAGTTGTATATGATTTGTGATTGGTC 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47069395739
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5