BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496395
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62180.1 | Symbols: AtCXE20, CXE20 | carboxyesterase 20 | ch... 1387 0.0
> AT5G62180.1 | Symbols: AtCXE20, CXE20 | carboxyesterase 20 |
chr5:24978844-24979849 REVERSE LENGTH=1006
Length=1006
Score = 1387 bits (751), Expect = 0.0
Identities = 912/989 (92%), Gaps = 13/989 (1%)
Strand=Plus/Plus
Query 19 CCAATCTCTGATCCTTACGCTTACCTTAACATCGTAAAAAATCCAGATGGTTCAATCACT 78
|||||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 16 CCAATCGCTGATCCTTATGCTTATCTTAACATCGTAAATAATCCAGATGGTTCAATCACT 75
Query 79 CGCGACCTCACCAACTTCCCATGCGCCGCAGCTACACCTGATCCTTCCCCACAAAACCCC 138
|||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 76 CGCGACCTCAGCAACTTCCCCTGCACCGCAGCTACACCTGATCCTTCCCCACTAAACCCC 135
Query 139 GCCGTTTCAAAAGATCTTCCCGTGAACCACTCAAATTCAACGTGGCTCCGTCTCTATCTT 198
||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||| |||
Sbjct 136 GCCGTTTCAAAAGATCTTCCCGTTAACCAATTAAAGTCAACGTGGCTCCGTCTCTACCTT 195
Query 199 CCCTCTTCCGCCGTAAACGACGG---CGTTTCGTCTCAGAAACTCCCTC-TCGTTGTGTA 254
||||| |||||||| ||||| || ||||||||||||||||||||| | | ||||||||
Sbjct 196 CCCTCCTCCGCCGTCAACGAGGGTAACGTTTCGTCTCAGAAACTCCC-CATTGTTGTGTA 254
Query 255 TTATCACGGCGGAGGATTCATCCTATGCAGCGTCGATATGCAACCCTTTCACGATTTCTG 314
||| || ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 255 TTACCATGGCGGAGGATTCATCCTCTGCAGCGTCGATATGCAACTCTTCCACGATTTCTG 314
Query 315 CTCCGAGATGGCTCGTGATCTCAACGCGATCGTCGTATCTCCCTCGTACCGGTTAGCTCC 374
||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 315 CTCCGAGGTGGCTCGTGATCTCAACGCCATCGTCGTATCTCCTTCGTACCGATTAGCTCC 374
Query 375 GGAGCACCGATTACCGGCGGCGTACGACGACGGTA-TGGAAGC-TCTGGAGTGGATTCAA 432
||||| ||||||||||||||||| |||||||| | | || || | |||| |||||| ||
Sbjct 375 AGAGCATCGATTACCGGCGGCGTATGACGACGG-AGTTGAGGCGT-TGGATTGGATTAAA 432
Query 433 ACCTCCGACGATGAGTGGATCAAATCTCACGCCGATTTCTCAAAGGTGTTCCTTATGGGA 492
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 433 ACCTCCGACGATGAGTGGATCAAATCTCACGCCGATTTCTCAAATGTGTTTCTTATGGGA 492
Query 493 ACTAGCGCCGGAGGGAACTTGGCTTACAACGTCGGACTAAGATCGG-CAGATTCCGTCTC 551
||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||
Sbjct 493 ACTAGCGCCGGAGGGAATTTGGCTTACAACGTCGGACTAAGATCCGTC-GATTCCGTCTC 551
Query 552 CGATCTGAACCCGTTACAGATCCGTGGATTGATTCTACACCATCCGTTCTTCGGCGGAGA 611
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 552 CGATCTGAGTCCGTTACAGATCCGTGGATTGATTCTACACCATCCATTCTTCGGCGGAGA 611
Query 612 AGAACGATGTGGATCTGAGATTAGACTTGTGAACGATCAGGTTTGTCCTCCCATAGTCAC 671
||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 612 AGAGCGAAGTGAATCTGAGATTAGACTTATGAACGATCAGGTTTGTCCTCCCATAGTCAC 671
Query 672 CGACGTAATGTGGGATCTGTCTCTTCCCGTGGGCGTTGACCGGGATCATGAGTATTCGAA 731
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 672 CGATGTAATGTGGGATCTGTCTCTTCCCGTCGGCGTTGACCGAGATCATGAGTATTCGAA 731
Query 732 TCCGACGGTGGGAGATGGATCGGAGGATTTGGAGAAAATCGGAGGGTTGAGATGGAAAGT 791
||||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||||||
Sbjct 732 TCCGACGGTTGGAGATGGATCGGAGAAGTTGGAAAAAATCGGACGGTTGAGATGGAAAGT 791
Query 792 GATGATGATCGGAGGAGAGGATGATCCAATGATAGATCGGCAGATAGATGTGGCTAAGCT 851
||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||| |||||
Sbjct 792 GATGATGATTGGAGGAGAGGATGATCCGATGATAGATCTGCAGAAAGATGTGGCAAAGCT 851
Query 852 GATGAAGAAGAAAGGAGTAGAAGTGGTGGAGCATTATACCGTCGGCCATGTTCACGGTGC 911
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 852 GATGAAGAAGAAAGGAGTAGAAGTGGTGGAGCATTATACCGGCGGCCATGTTCACGGTGC 911
Query 912 TGAGATCGGAGAACCTTCTAAACGTAAAACTCTCTTTCTTTCCATCAAAAACTTCAT-TT 970
||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 912 TGAAATCAGAGATCCTTCTAAACGTAAAACTCTGTTTCTTTCCATCAAAAACTTCATATT 971
Query 971 CCTCTCTTGTGTAACtttttttttttttt 999
| ||| || ||||||||||||||||||||
Sbjct 972 C-TCTGTTCTGTAACTTTTTTTTTTTTTT 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48978293325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5