BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496396
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | ... 3496 0.0
> AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75)
| chr5:24980268-24983973 REVERSE LENGTH=2384
Length=2384
Score = 3496 bits (1893), Expect = 0.0
Identities = 2221/2375 (94%), Gaps = 39/2375 (2%)
Strand=Plus/Plus
Query 1 TTTGTCGTCTCTCCCTGCTTTCGCACTTTCAATAGCCTCAATCTCTCAAAAAGCAGAAGA 60
|||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct 8 TTTGTCGTCTCTCCCTGCTTTCGCAC-TTC-ATAGCCTCAATCTCTCAACAAGCAGAAGA 65
Query 61 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCACTAATGTTATCTGATaagaaag 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 66 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCCCTAATGTTATCTGATAAGAAAG 125
Query 121 aggagaagaagatgaagaagaagaTAGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 126 AGGAGAAGAAGATGAAGAAGAAGATGGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 185
Query 181 GGAAGAAGGAGCCGAAGCTGAAACTATCTGATTCTGATgaagaagagtcggagaagaaga 240
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 186 GGAAGAAGGAGCAGAAGCTGAAACTATCTGATTCGGATGAAGAAGAGTCGGAGAAGAAGA 245
Query 241 agagtaagaagaaggataagaagcgtaaggcttccgaggaggaggatgaagtgaagaGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGAGTAAGAAGAAGGATAAGAAGCGTAAGGCTTCCGAGGAGGAGGATGAAGTGAAGAGCG 305
Query 301 ATTCGAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGTGTTGAAGATGTTG 360
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 306 ATTCAAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGCGTTGAGGATGTTG 365
Query 361 AAGTTGATAACCCTAATGCTATTTCCAATTTTCGGATTTCTGCTCCGTTGAGGGAGAAGC 420
|||||||||||||||||||| |||| || |||||||||||||| || |||||||||||||
Sbjct 366 AAGTTGATAACCCTAATGCTGTTTCTAAGTTTCGGATTTCTGCGCCTTTGAGGGAGAAGC 425
Query 421 TTAAGGCGAAGGGTATTGAAGCTCTTTTCCCGATTCAAGCTACAACTTTTGATATGGTTC 480
|||||||||| |||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 426 TTAAGGCGAATGGTATTGAAGCTCTTTTCCCGATTCAGGCTTCCACGTTTGATATGGTTC 485
Query 481 TCGATGGTGCTGATTTAGTTGGACGTGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 486 TCGATGGTGCTGATTTAGTTGGACGGGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 545
Query 541 TGTTGCCTATATTGGAATCGTTGGTTAATGGACCTGCCAAAAACAAAAGGAAGATGGGAT 600
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 546 TGTTGCCTATATTGGAATCTTTGGTTAATGGACCTGCCAAAAGCAAAAGGAAGATGGGAT 605
Query 601 ATGCCAGGGCACCAAGTGTATTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 660
||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATGGCAGGTCACCAAGTGTTTTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 665
Query 661 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTATCTATGGAG 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 666 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTCTCTATGGAG 725
Query 721 GTGATAGCTATACAGCTCAGGAGAATAAATTAAGGAGAGGTGTTGACATTGTAGTTGGAA 780
||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 726 GTGATAGCTATCCAGTTCAGGAGGGTAAATTAAAGAGAGGTGTTGACATTGTAGTTGGAA 785
Query 781 CCCCTGGTCGTATTAAGGATCATATTGAGAGACAAAACATTGATCTCAGCCATCTGCAAT 840
|||||||||||||||||||||||||||| ||||||||| ||||| ||||| || | ||||
Sbjct 786 CCCCTGGTCGTATTAAGGATCATATTGAAAGACAAAACCTTGATTTCAGCTATTTACAAT 845
Query 841 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 905
Query 901 TTATATTAGGGAAAGTGGAGGATCCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 960
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 906 TTATTTTAGGGAAAGTGGAGGATTCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 965
Query 961 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1025
Query 1021 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATCGCTATACCCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1026 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATTGCTATTCCTT 1085
Query 1081 GTAATAAGGCGGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1140
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GTAATAAGGCAGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1145
Query 1141 GCCAAACCATTATTTTCGCTGAGAA-GAAAAATGAAGTTTCCGAGCTTTCTGGTTTGTTG 1199
||||||| |||||||||||||| || ||| | ||||||| ||||||||||||||||||
Sbjct 1146 GCCAAACTATTATTTTCGCTGA-AACTAAAGTTCAAGTTTCTGAGCTTTCTGGTTTGTTG 1204
Query 1200 GCTGGGTCAAGAGCCTTGCATGGTGAAATACCTCAAGCTCAACGTGAGGTTACTCTTGCT 1259
| ||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1205 GATGGATCAAGAGCCTTGCATGGTGAAATACCTCAATCACAACGTGAGGTTACTCTTGCT 1264
Query 1260 GGATTTAGGAATGGCAAGTTTTCGACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1319
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1265 GGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1324
Query 1320 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1384
Query 1380 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACTGGAGTTGCAGTTACGCTCTAC 1439
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1385 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACAGGAGTTGCGGTTACACTCTAC 1444
Query 1440 GAGTCTAGAAAGTCGAGTGTATCAAGGATCGAAAAGGAAGCTGGTATAAAATTTGAGTAC 1499
|| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||
Sbjct 1445 GATTCTAGAAAGTCGAGTGTATCCAGGATCGAAAAAGAAGCTGGTATCAAATTTGAGCAC 1504
Query 1500 ATTTCTGCACCTCAGCCTGATGATATTGCCAGAGCTGTTGGTATGGAAGCTGCTGAGAAT 1559
|| |||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 1505 CTTGCTGCACCTCAACCTGATGAAATTGCCAGATCTGGTGGTATGGAAGCTGCTGAGAA- 1563
Query 1560 A-TTAAAAAAGTCTGTGACAGTGTGGTTCCTGCATTCCTGGGAGCTGCCAAGGAATTATT 1618
| ||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1564 AGTTAAACAAGTGTGTGACAGTGTGGTTCCTGCATTCCTTGAAGCTGCCAAGGAATTATT 1623
Query 1619 AGAATCTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACAGCGGG 1678
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1624 AGAAACTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACTGCGGG 1683
Query 1679 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACCATGTGACACTACA 1738
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1684 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACTATGTGACACTACA 1743
Query 1739 TCTTGAAGCAGGGAAACCAATGTACTCGCCATCATATGTTTATGGATTGCTAAGGAGAGT 1798
||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 1744 TCTTGAAGCAGGGAAACCAATATACTCGCCATCATTTGTTTATGGACTGCTAAGGAGAGT 1803
Query 1799 TTTACCAGATGACAAGGTGGAACA-GATTGAAGGGTTATCTCTAACAGCAGATAAAAGC- 1856
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 1804 TTTACCGGATGACAAGGTGGAA-ATGATTGAAGGGTTATCTCTAACAGCAGATAAAA-CA 1861
Query 1857 GGAGCAGTGTTTGATGTTAAGCAATCGGATCTAGCCTTGTTCCTTGCAGCTGGACAAAAG 1916
||||| ||||| |||||||||||||| ||||||| ||||||| |||||| | |||||||
Sbjct 1862 GGAGCTGTGTTCGATGTTAAGCAATCAGATCTAGACTTGTTCATTGCAGGAGCACAAAAG 1921
Query 1917 AGTGCTGGAAGTATGAGCTTGGAAGTGGTTAAGGAGATGCCTAAACTTCAGGAGAGAGAA 1976
||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1922 AGTGCTGGAAGTATGAGTTTGGAAGTGGTTAAGGTGATGCCTAAACTCCAGGAGAGAGAA 1981
Query 1977 CCATTGCCACAAAAAAGATACGGTCGCAATG-Ctggtggaaaccggtttggaggtggtgg 2035
||||||||||||||||||| |||| | || | | ||||| |||||||| ||||||
Sbjct 1982 CCATTGCCACAAAAAAGATTCGGTGGTGGTGGCAGA-GGAAATCGGTTTGG---TGGTGG 2037
Query 2036 tggtggaaatcggtttgg---tggtggtggcagaggaagagg------tggtggtAGAGG 2086
||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2038 TGGAGGAAATCGGTTTGGCGGTGGTGGTGGCAGAGGAAGAGGAGGCAGTGGTGGTAGAGG 2097
Query 2087 CCAGAGATATTGAAAACTCGAACCCAACTTCTCTCTCCTTTTGATaaaaaaaGATACTAA 2146
|||||||||||||||||| |||||||||||||| || || | ||| ||||||| |||||
Sbjct 2098 CCAGAGATATTGAAAACTGGAACCCAACTTCTC-CT--TTCT-ATATAAAAAGAAACTAA 2153
Query 2147 ACTCCCTCTTATAATTTCATTACTATCTTCTTGCGCTGATGATTTCTACACTATAATAGG 2206
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2154 ACTCCGTCTTATAATTTCATTACTATCTTCTTCCGCTGATGTTTTCTACACTATAATAGG 2213
Query 2207 TG--TTTTCTGTGTGTTTTCCGttttttttttCTTTCTTTGAACAAACTTAAGGAGGCTC 2264
|| |||||||||| ||| || |||| ||| | ||| ||||||||||| ||||||||
Sbjct 2214 TGGCTTTTCTGTGT-TTT-CCATTTTCTTT--C---CTT-GAACAAACTTATGGAGGCTC 2265
Query 2265 TCTTGTGTCCTCTTATCAATTTTGTGTAAT-TTGGATGATAATGATGATTAAATTATTAC 2323
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2266 TCTTGTACCCTCTTATCAATTTTGTGTAATGTTGGATGATAATGATGATTAAATTATAAC 2325
Query 2324 TTCGTCACTAATGGGAATTGTTTTGTAGGTTTCAA 2358
||||||||| || |||||||||||||| |||||||
Sbjct 2326 TTCGTCACTCATTGGAATTGTTTTGTAAGTTTCAA 2360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5