BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496397
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62200.1 | Symbols: | Embryo-specific protein 3, (ATS3) | c... 1040 0.0
> AT5G62200.1 | Symbols: | Embryo-specific protein 3, (ATS3) |
chr5:24984236-24985711 REVERSE LENGTH=837
Length=837
Score = 1040 bits (563), Expect = 0.0
Identities = 699/762 (92%), Gaps = 20/762 (3%)
Strand=Plus/Plus
Query 1 GCGATTTCTCGAAGCACGAAAATGGCGTCCGTACGA--C-TCTTCACTCTCATCTCCTTC 57
|||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||
Sbjct 17 GCGATTTCTCGAAGCACGAAAATGGCGTCCGTACGACTCTTCTTCACTTTAATCTCCTTC 76
Query 58 GTCTTCCTTATATTCATCTCGGTTTCCGAATCAAAAGTCTTGGA---GCCTCACGTCGCT 114
|||||| |||||| || ||| |||| |||||||||||| ||||| ||||||||||||
Sbjct 77 GTCTTCATTATATCCACCTCTGTTTACGAATCAAAAGTATTGGATCCTCCTCACGTCGCT 136
Query 115 GAATCATTCAACGTCAGCCTCATCCAGAGATTGGGGAATACTTGTTCTTACACAGTGATC 174
|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 137 GAATCATTCAACGTTAGCCTCATCCAGAAATTGGGGAATACTTGTGCTTACACAGTGATC 196
Query 175 ATCTCGACGAGCTGTTCGTCGACTAGGTACACGCGCGATCAGATCAGCGTCGCTTTCGGC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 ATCTCGACGAGCTGTTCGTCGACTAGGTACACGCGCGATCAGATCAGCGTCGCTTTCGGC 256
Query 235 GATGGCTATGGAAACCAGATATACGCACCAAGGCTTGACGATCCATCTTCAAAAACGTTC 294
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 257 GATGGCTATGGTAACCAGATATACGCACCAAGGCTTGATGATCCATCTACAAAAACGTTT 316
Query 295 GAGCAATGTTCATCAGATACATTTCAGATAAACGGACCATGCACATACCAGATATGCTAT 354
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 317 GAGCAATGTTCATCAGATACATTTCAGATAAACGGACCATGTACATACCAGATATGCTAT 376
Query 355 GTGTATCTCTATAGGTCTGGTCCAGATGGTTGGATCCCAGACAGTGTAAAGATATTTAGC 414
|| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 377 GTATATCTCTACAGGTCTGGTCCAGATGGTTGGATCCCAAACACTGTAAAGATATATAGC 436
Query 415 CATGGCTCTAAAGCGGTCACCTTCTCATATAACACACACGTCCCTGAGAGTGTATGGTAT 474
|||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||||
Sbjct 437 CATGGCTCTAAAGCGGTCACCTTCCCATATAACACATATGTTCCTGAGAGTGTATGGTAT 496
Query 475 GGTTTCAATTACTGCAACAGCGCCTCAGATTCTAATGTCCTAGCCATCGGTCTCAGAAGG 534
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 497 GGTTTCAATTACTGCAACAGCGCCTCAGATTCTAATGTCCTTGCCATTGGTCTCAGAAGG 556
Query 535 ATCGTGATCATACTCCTAGGGTTTGTTGTAGCCGCTACAACATTGCTCTTGTAAGCTGTT 594
| |||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||
Sbjct 557 AGCGTGATCATACTCCTAGGTTTTGTTGTCGCCGGTACCACATTGCTCTTGTAAGCTGTT 616
Query 595 ATGGTTCCGGTTTTGTATGAGCATATTAGGACTTGTAAAGAATAAATGTGTACCG----G 650
||| |||||||||||||| | ||||||||||||||| |||||||||||||||||| |
Sbjct 617 ATGTTTCCGGTTTTGTATAAACATATTAGGACTTGTGAAGAATAAATGTGTACCGTTTTG 676
Query 651 ---AAATGGGTCTCATATCTGTATTAA-------CCATAAATCTATAATGAAGTTGCTTA 700
|||||||||||| | ||||||||| |||||||||||| |||||||| ||||
Sbjct 677 GGGAAATGGGTCTCAGAACTGTATTAAGTATTAACCATAAATCTATGATGAAGTTACTTA 736
Query 701 CTCCTAATTACATAGTGTGTAAATCTTATGAGCAGTGTGTAT 742
|||||||||||| ||| |||||||||||||||||||||||||
Sbjct 737 CTCCTAATTACAGAGTCTGTAAATCTTATGAGCAGTGTGTAT 778
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 741 ATTTGTGACAGTTCATCAACTATATATGTG 770
||||||||||||||||||||||||||||||
Sbjct 790 ATTTGTGACAGTTCATCAACTATATATGTG 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5