BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496400
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62240.1 | Symbols: | Cell cycle regulated microtubule asso... 1801 0.0
> AT5G62240.1 | Symbols: | Cell cycle regulated microtubule associated
protein | chr5:25002358-25004766 REVERSE LENGTH=1514
Length=1514
Score = 1801 bits (975), Expect = 0.0
Identities = 1181/1278 (92%), Gaps = 24/1278 (2%)
Strand=Plus/Plus
Query 74 TCGAGGATCGATTATGGTTCCGGAATCATCATC----ATCAATAAGTTTTTCTGGAGATG 129
|||||||| ||| |||||||| ||||||||||| || ||| ||||||||||| ||||
Sbjct 185 TCGAGGATTGATAATGGTTCCCGAATCATCATCGAGGAT-AATGAGTTTTTCTGGCGATG 243
Query 130 ATTTCGAATTCGATATTGATTTCGAATTCGATGCACCGAGGTTTTATGATTTCTCTAGAC 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 244 ATTTCGAATTCGATATTGATTTCGAATTCGATGCACCGAGGTTCTATGATTTCTCTAGAC 303
Query 190 CAGAGCTTGATTCCGAGACTGAAGAAATCGAAACCTGGTTTCAATCCTCTGGAAACTATC 249
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 304 CTGAGCTTTATTCCGAGACTGAAGAAATCGAAATCTGGTTTCAATCCTCTGGAAACTATC 363
Query 250 CTCCTTCACCTTTTAGCCCAAAATTCAATTGGAAATTTGAGCCGTTTAAGCAAATTACAA 309
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 364 CTCCTTCACCTTTTAGCCCAAAGTTCAATTGGAAATTTGAGCCATTTAAGCAAATTACAA 423
Query 310 ATACCATATCAGACTCTAAGCCTGTGGAGATCATCGAATCCTCCTTGGATA-CCGATACC 368
| ||||||||||| ||||||||||||||||| || ||||||| | ||| | |||| |||
Sbjct 424 ACACCATATCAGAGTCTAAGCCTGTGGAGATTATTGAATCCT-C--GGA-AGCCGAGACC 479
Query 369 GGTCTGAATCGCAAAGATAAATTCAACGGGTTCATATATTACAACCAAACCGTTAAAGAT 428
||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 480 GGTTTGAATTGCAAAGATAAATTCAACGGCTTCATATATTATAACCAAACCGTTAAAGAT 539
Query 429 GTGTCCAATACAAAATCGAAATCTAAAACCAAACCAAGTAACTCTACTTTGACAAGACCT 488
|| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GTATCCAAGAAAAAATCGAAATCTAAAACCAAAACAAGTAACTCTACTTTGACAAGACCT 599
Query 489 ACGGCTTCTTTGCTTGCAAGGCAGAACAAACCGTTAGACATTTACTCTGTTCAACTTCTG 548
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 600 ACGGCTTCTTTGCTTGCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTG 659
Query 549 ACAAGATGTCAGAGGTCTTTAGCCAAGTTTGGTGAAAACGTATCACCGATCTTAGTCTCT 608
|||||||||||| | || |||||||||||||||||||| ||| | ||| |||||||||||
Sbjct 660 ACAAGATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTCTCT 719
Query 609 AAATTACAAAACCAAGACACCAATAGGCAAAAA-ATGGAAGCTAAGGTGGCTCCTGTTAG 667
|| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 720 AAGTTACAAAACCAAGACACCAATAGGCAAAAACA-GGAAGCTAAGGTGGCTCATGTTAG 778
Query 668 CAGAAGAACCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGA 727
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGA 838
Query 728 AAGGCACAGGTCTAAGGTTAACTCAGAGACCGAGCAGATTGCGACATCAAGTTCTAAAAG 787
||| |||||||||||||||||| || ||| ||||||||||||||||||| |||||||||
Sbjct 839 AAGACACAGGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG 898
Query 788 ACACATTAGGAACAAAAATATTAATCTGGAACCT-TCTTCAACATCTCTGCCCAAAAGTA 846
|||||||||||||||||||||||||||||||||| | |||||||||| || | |||| ||
Sbjct 899 ACACATTAGGAACAAAAATATTAATCTGGAACCTGT-TTCAACATCTTTGGCTAAAACTA 957
Query 847 ATACACCACGGTCCCAACAGTTTCAGGCATTTCGTTTAAGAACATCACTGAGAGCAAAGG 906
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 958 ATACGCCACGGTCCCAACATTTTCAGGCATTTCGTTTAAGGACATCACTGAGAGCGAAGG 1017
Query 907 AACGCTCTTCAAATGCTAAAATCGATGTCATACAAGAAAATGATGCTACTAACTCCAGAA 966
||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||||||
Sbjct 1018 AACGCTCTTCAAATGCTAAAACCGATGTCGTACAAGAGAATGATGCTACTAAGTCCAGAA 1077
Query 967 CACTAAAACGTTCTCAGCCCATTGATTCCTCAAAAACTAGGATAGTCAAAGAAAATCACA 1026
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1078 CACTAAAAA------AGCCCATTGATTCCTTAAAAACTAGGATAGTCAAAGAAAATCACA 1131
Query 1027 GCAGAAAGATAAATTGCCAAGTGTATGAATCTAAAACTTCCCCTCTAGACCCAAAGGTAT 1086
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1132 GCAGAAAGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGATAT 1191
Query 1087 CAAGCAAAGGAAAAC-TCGGTGGAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGC 1145
||||||||| || || ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1192 CAAGCAAAG-AAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGC 1250
Query 1146 AGGACAGATATTAGCAGGAGCCTGGATTTATGCCGGAAGTTCGACTCACAGGAAGTTGCA 1205
||||||||||||| ||||||||||||||| |||||||| ||||| || ||||||||||||
Sbjct 1251 AGGACAGATATTAACAGGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCA 1310
Query 1206 AGGAACCTAATCACTGCTTAATCTTCACCTTGAAGATGTTCTTTCATGTTTTATACATGT 1265
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1311 AGGAACCTAATCACTGCTTAATCTTCATTTTGAAGATGTTCTTTCATTTTTTATACATGT 1370
Query 1266 AACACACGCATTCCTATGTCTATATATAAGTAAACATGTATACTTGTTTAGATATATGGA 1325
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
Sbjct 1371 AACACACGCATTCCTATGTCTATATA-A-GTAAACGTGTATACTTGTTTAGATATATGCA 1428
Query 1326 TAGAGAATGAGATTTTTT 1343
||||||| ||||||||||
Sbjct 1429 TAGAGAAAGAGATTTTTT 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5