BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496401
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62250.1 | Symbols: MAP65-9 | microtubule-associated protein... 2538 0.0
> AT5G62250.1 | Symbols: MAP65-9 | microtubule-associated protein
65-9 | chr5:25005756-25008096 FORWARD LENGTH=1650
Length=1650
Score = 2538 bits (1374), Expect = 0.0
Identities = 1567/1658 (95%), Gaps = 22/1658 (1%)
Strand=Plus/Plus
Query 1 ATGTCCAACTCTCAAATCGAATCAACTT-GTGCATCTCTTCTACAACAACTTGAGATTAT 59
|||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1 ATGTCCAAATCTCAAATCGAATCAACTTGGT-CATCTCTTCTACAAGAACTTGAGATTAT 59
Query 60 ATGGAACGAGGTTGGAGAAACTGAAACAGAAAGGGAGAAGATTTTGATTGAAATCGAAGA 119
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 ATGGAAAGAGGTTGGAGAAACTGAAACAGAAAGGGAGAAGATTTTGATTGAGATCGAAGA 119
Query 120 AGAATGCGGAGAAGTCTACAATCGAAAAATCGAAAAGTTTAAAGAAGAGAGGATTCGGAT 179
||||||| ||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 120 AGAATGCAGAGAAGTCTACAATCGAAAAATCGAAAAGGTTAAAGAAGAAAAGATTCGGAT 179
Query 180 AAAACAAGAGATTGCTGATTCAGAAGCAAGAGTTATTGATATATGTTCTGTAATGGACGA 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 180 AAAACAAGAGATTGCTGATTCTGAAGCAAGAGTTATTGATATATGTTCTGTAATGGAAGA 239
Query 240 GCCACCAATTCTTGGAAGACAACATCAATCTGATCAAC-AA-----AATGGGAGAAGCTT 293
||||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 240 GCCACCAATTCTTGGAAGACACCATCAATCTGATCAACAAAGTGGTAATGGGAGAAGCTT 299
Query 294 GAAAGATGAGTTAGTAAAGATTCTTCAGAAACTTGAGGAAATGGAAAAAAGAAAATCAGA 353
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 300 GAAAGATGAGTTAGTAAAGATTCTTCAGAAACTTGAAGAAATGGAAAAGAGAAAATCAGA 359
Query 354 GAGGAAGAAACAGTTTATTCAAGTAATTGAAGATATAAGATGTGTAAGAGATGAGATTAA 413
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 360 GAGGAAGATTCAGTTTATTCAAGTAATTGATGATATAAGATGTGTAAGAGAAGAGATTAA 419
Query 414 TGGAGAATCTTATCA-GAGTACTTGTTCATCTGATTTTT-TGGTTGATGAATCCGATTTA 471
|||||||||| || | ||| ||||||||||||||||||| | | ||||||||| ||||||
Sbjct 420 TGGAGAATCTGATGATGAG-ACTTGTTCATCTGATTTTTCT-GCTGATGAATCTGATTTA 477
Query 472 TCTCTTAGAAAGCTTGAAGAGTTACATAGAGAGCTTTACACACTTCAAGAACAGAAGAGA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TCTCTTAGAAAGCTTGAAGAGTTACATAGAGAGCTTTACACACTTCAAGAACAAAAGAGG 537
Query 532 AACCGGGTGAAACAGATTCAAGATCATCTAAAAACTCTCGAATCGCTTAGTTCGGTTCTC 591
|||||||||||||||||||||||| || ||| |||||| ||||||||| ||||||||||
Sbjct 538 AACCGGGTGAAACAGATTCAAGATAATATAAGAACTCTTGAATCGCTTTGTTCGGTTCTT 597
Query 592 GGTTTGAATTTTCGAGAAACTGTCACCACGATTCACCCAAGTTTAGTAGAAT-CTGAAGG 650
||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||
Sbjct 598 GGTTTGAATTTTCGAGAAACTGTTACCAAGATTCACCCAAGTTTAGTAG-ATACTGAAGG 656
Query 651 GTCAAGAAGTATAAGTAATGAAACACTTGACAAGTTAGCTTCATCAATA-AAAAACTGGC 709
|||||||||||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 657 GTCAAGAAGTATAAGTAATGAAACACTTGACAAGTTAGCTTCATCAGTACAACAA-TGGC 715
Query 710 ATGAGATAAAGATACAGAGAATGCAAGAACTCCAAGATCTCGTGACGACGATGCTTGAGT 769
|||||| |||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 716 ATGAGACAAAGATTCAAAGAATGCAAGAACTTCAAGATCTCGTGACAACGATGCTTGAGT 775
Query 770 TTTGGAATTTAATGGATACACCAGCAGAAGAACAACAAAAGTTCATGGATGTTTCATGTA 829
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 776 TTTGGAATTTAATGGATACACCAGCAGAAGAACAACAAAAGTTCATGGATGTATCATGTA 835
Query 830 ATATAGCGGCTACTGTTTCTGAAATAACCAAACCAAATAGTCTTTCTATAGATTTGCTAG 889
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 836 ATATAGCTGCTACTGTTTCTGAAATAACCAAACCCAATAGTCTTTCTATAGATTTGCTAG 895
Query 890 AAGAGGTTAAAGCTGAGCTGTGTCGGTTGGAGGAGTTGAAGTGGAGCAAAATGAAAGAAC 949
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAGAGGTTAAAGCTGAGCTATGTCGGTTGGAGGAGTTGAAGTGGAGCAAAATGAAAGAAC 955
Query 950 TTGTTCTAAAGAAAAGGTCAGAGCTTGAAGAGATATGCAGAAGAACACACATAGTGCTTG 1009
||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 956 TTGTTCTAAAGAAAAGGTCAGAGCTTGAAGAGATATGTAGAAGAACACACATTGTTCTT- 1014
Query 1010 AAGAAGAAGAAGATATTGCGGTTGAGAATGTAATCAAAGCCATTGAATCGGGAGATGTGA 1069
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1015 --GAAGAAGAAGATATCGCGGTAGAGAATGTAATCAAAGCCATTGAATCAGGAGATGTGA 1072
Query 1070 ACCCTGAAAATATACTAGAACAGATCGAATATCGAGCAGGGAAAGTGAAAGAGGAAGCTC 1129
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1073 ACCCTGAAAATATACTAGAACAGATCGAGTATCGAGCTGGGAAAGTGAAAGAGGAAGCTC 1132
Query 1130 TAAGCAGAAAAGAGATTCTTGAAAAAGCTGAGAAATGGTTGAATGCTTGTGAGGAAGAGA 1189
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1133 TAAGCAGAAAAGAGATTCTTGAGAAAGCTGATAAATGGTTGAATGCTTGTGAGGAAGAGA 1192
Query 1190 ACTGGCTTGAAGAGTATAATCAGGATGAAAACCGATACAACGCTGGAAAAGGATCTCATT 1249
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATTGGCTTGAAGAGTATAATCAGGATGAAAACCGATACAACGCTGGAAAAGGATCTCATT 1252
Query 1250 TAATCCTCAAACGCGCAGAGAAAGCTCGTGCACTTGTTAATAAACTTCCAGCTATGGTTG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TAATCCTCAAACGCGCAGAGAAAGCTCGTGCACTTGTTAATAAACTTCCAGCTATGGTTG 1312
Query 1310 AAGCATTAGCTTCCAAGATTACAATATGGGAATCAGAGAAAGAATCTGAGTTTCTCTTTG 1369
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1313 AAGCATTAGCTTCCAAGATTACAATATGGGAATCAGAGAAAGAATATGAGTTTCTCTTTG 1372
Query 1370 ATGGTAATCGTTTACTTTCAATGCTCGAGGAGTATTCTGAACTCAGAGAAGAGAAAGAAC 1429
|||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1373 ATGGTAATCGCCTACTTTCAATGCTCGAAGAGTATACGGAACTCAGAGAAGAGAAAGAAC 1432
Query 1430 AAGAACGCCGCAGAAAGAGGGATCTGAAGAAACTTCAGGGTCAAGTGATATCAGAGCAAG 1489
||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 1433 AAGAACGCCGCAGAAAGAGGGATCTGAAGAAACATCAAGGTCAAGTGACATCAGAGCAAG 1492
Query 1490 ACAAAGGAAATGTTACGAAGCCTCAAAGCGCGAAAAAGGGTCTTAAAGTGTCAACTAACA 1549
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1493 ACAAAGGAAGTGTTACGAAGCCCCAAAGCGCGAAAAAGGGTCTTAAAGTGTCAACTAACA 1552
Query 1550 AGAGATTTGTCTCATCACCTCATACTCCTCGAGCTGATTCGCCTCAGTCAGCAAAATCGA 1609
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1553 AGAGATTTGTCTCATCACCTCATACTCCTCAAACTGATTCGCCTCACTCAGCAAAATCGA 1612
Query 1610 ATCAATA-TTT--TACTCCTCTATCACGCCATAGCTGA 1644
|||||| ||| ||||||||||||||||||| |||||
Sbjct 1613 ATCAATCGTTTAGTACTCCTCTATCACGCCATGGCTGA 1650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5