BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496402
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62260.1 | Symbols: | AT hook motif DNA-binding family prot... 2161 0.0
> AT5G62260.1 | Symbols: | AT hook motif DNA-binding family protein
| chr5:25009027-25011588 FORWARD LENGTH=1577
Length=1577
Score = 2161 bits (1170), Expect = 0.0
Identities = 1455/1584 (92%), Gaps = 54/1584 (3%)
Strand=Plus/Plus
Query 1 AAGCTCTGGCATTTCTCTGCTACAGTGTTGGGTTTCAGCTGCAGAATTGTTGAAGAAAGT 60
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 9 AAGCTCTGGCATTTCTCTGCTACAGTGTTGGTTTTCAGCTGCAGAATTGGTGAAAAAAGT 68
Query 61 TTGGTGAATTTCAGGAGC--AG------AG-----TT------TT--T-AGAAAATGGAG 98
|||||||||||||||||| || || || || | |||||||||||
Sbjct 69 TTGGTGAATTTCAGGAGCAGAGTATTTAAGTAATTTTGGGGAATTAGTGAGAAAATGGAG 128
Query 99 GAGAAGGGTGGAATAAGTCCAAGTGGGGTCGTCACAGTTAAGGAAGATGAAGCTTTGGTT 158
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 129 GAGAAAGGTGAAATAAGTCCAAGTGGGGTCGTCACAGTTAAGGGAGATGAAGCTTTGGTT 188
Query 159 CCAAGAACAGAGTTTCAACAAAACCCTAGCTTTCTCCAATTCGTGAGTCCCACGACGGTA 218
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 189 CCAAGAACAGAGTTTCAACAAAACCCTAGTTTTCTCCAATTCGTGAGTCCCACAACGGTA 248
Query 219 GTGTCTCCTCTGCCTCTTCCACCAGCTCCGTCTCCGGCTCCGGTACCAGCCACCGTGACT 278
||| ||||||| |||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 249 GTGACTCCTCTCCCTCCTCCACCAGCTCCGTCTTCGGCTCCGGTACCAACCACCGTGACT 308
Query 279 CCTGACTCAGCCGCAGCATCGACCGGATCAGATCCGACGAAGAAGAAGAGAGGAAGACCG 338
|||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 309 CCTGGCTCAGCCACAGCATCAACCGGATCAGATCCGACGAAAAAGAAGAGAGGAAGACCG 368
Query 339 AGGAAGTACGCACCAGATGGAAGCCTGAACCCTAGGTTTTCGAGACCAACTCTGTCTCCA 398
||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 369 AGGAAGTACGCACCAGACGGAAGCCTGAACCCTAGGTTTTTGCGACCAACTCTGTCTCCA 428
Query 399 ACTCCAATCTCATCTTCGATTCCATTGTCTGGAGATTATCAATGGAAACGAGGCAAAGCT 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ACTCCAATCTCATCTTCGATTCCATTGTCTGGAGATTATCAATGGAAACGAGGCAAAGCT 488
Query 459 CAGCAGCAGCATCAGCCTCTTGAATTCGTCAAGAAATCTCACAAATTTGAGTATGGAAGT 518
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 489 CAGCAGCAGCATCAGCCTCTTGAGTTCGTCAAGAAATCTCACAAATTCGAGTATGGAAGC 548
Query 519 CCAGCTCCTACTCCTCCTCCTCCTGGGCTCTCATGTTACGTGGGTGCAAATTTTACAACC 578
||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |||
Sbjct 549 CCAGCTCCTACTCCTCCTCTTCCTGGGCTCTCATGCTATGTGGGTGCAAATTTTACGACC 608
Query 579 CATCAATTTACTGTCAATGCCGGTGAGGATGTAACAATGAAGGTTATGCCGTATTCGCAA 638
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 609 CATCAATTTACTGTCAATGGCGGTGAGGATGTGACAATGAAGGTTATGCCGTATTCGCAA 668
Query 639 CAAGGATCTCGAGCTATCTGCATTCTTTCTGCAACTGGTTCGATCTCTAATGTCACTCTT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CAAGGATCTCGAGCTATCTGCATTCTTTCTGCAACTGGTTCGATCTCTAATGTCACTCTT 728
Query 699 GGTCAGCCTACCAATGCAGGTGGCACTCTTACATATGAGGGTCGATTTGAGATACTATCG 758
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 729 GGTCAACCTACCAATGCAGGTGGCACTCTTACATATGAGGGTCGGTTTGAGATACTATCG 788
Query 759 CTATCTGGTTCCTTTATGCCTACTGAGAATGGAGGAACAAAAGGTCGGACTGGTGGGATG 818
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 789 CTATCTGGTTCCTTTATGCCTACTGAAAATGGAGGAACAAAAGGTCGGGCTGGTGGGATG 848
Query 819 AGCATTTCTTTAGCTGGACCAAATGGCAAAATCTTCGGTGGTGGCCTTGCCGGTATGCTT 878
|||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||
Sbjct 849 AGCATTTCTTTAGCCGGACCAAATGGCAATATATTTGGTGGTGGCCTTGCCGGTATGCTT 908
Query 879 ATAGCAGCCGGTCCTGTTCAGGTGGTAATGGGAAGTTTCATTGTGATGCATCAAGCAGAA 938
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 ATAGCAGCTGGTCCTGTTCAGGTGGTAATGGGAAGTTTCATTGTGATGCATCAAGCAGAA 968
Query 939 CAAAATCAGAAGAAGAAACCGCGAGTTATGGAAGCTTTTGCTCCACCACCGCAACAA-C- 996
|||||||||||||||||||| |||||||||| |||||||||||||||| | |||| |
Sbjct 969 CAAAATCAGAAGAAGAAACCTAGAGTTATGGAGGCTTTTGCTCCACCACAACCACAAGCA 1028
Query 997 C-ACCACAACTGCAACAACAACAACCTCCTACTTTCACCATAACCACTGTGAATTCAACT 1055
| ||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1029 CCACCACAACTGCAACAACAACAACCTCCTACTTTTACCATAACAACCGTGAATTCAACT 1088
Query 1056 TCTCCAGCG---A-C-C-GTAGAGGAGCCGAAACAACAACCCTACGGTGGTGGTATAGTG 1109
||||| || | | | |||||||||| ||||| |||| | || |||||||||||||||
Sbjct 1089 TCTCCTTCGGTGAACACCGTAGAGGAGCAGAAACCACAAGCTTATGGTGGTGGTATAGTG 1148
Query 1110 AGACCGATGGCTCAAATGTCTTCTTCTTTCCAAAACGAGAATTCAACTATGAACAATTTC 1169
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1149 AGACCGATGGCTCAAATGCCTTCTTCTTTCCAAAACGACAATTCAACTATGAACAATTTC 1208
Query 1170 ACACCGCCCTATCACGGATACGGGAATATGAACACGGGCACTA---ACAAAGACGAACAT 1226
|||||| ||||||| |||||||||||||||||||| || |||| ||||||| ||||||
Sbjct 1209 ACACCGGCCTATCATGGATACGGGAATATGAACACTGGTACTACTCACAAAGAAGAACAT 1268
Query 1227 GAAGACGACGATGGTGGTGA--A-GATGATGATTCGGGCGATACTAGGAGCCAATCTCTT 1283
|||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||| |
Sbjct 1269 GAAGACGAAGATGGTGGTGATGATGATGATGATTCAGGCGATACTAGGAGCCAATCTCAT 1328
Query 1284 AGTGGTTGAGCAATTCTC-GAATCAAAGTCAGAAAGTTTTCTTGTGTAGAAAGGAAGGGA 1342
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AGTGGTTGAGCAATTCTCTGA-TCAAAGTCAGAAAGTTTTCTTGTGTAGAAAGGAAGGGA 1387
Query 1343 GCTTAAAGGATTCAGcttttctttggttttttagaggtttgttttagttgtgtgagggtt 1402
|||||||||| | |||||| ||| | ||||| ||||||||||||||||||||||
Sbjct 1388 GCTTAAAGGAGT--GCTTTT-TTT--T-----AGAGGGTTGTTTTAGTTGTGTGAGGGTT 1437
Query 1403 ttcttcttttgagtgttttttctaatttctagcagtttttttctttctctGTGATCGGTT 1462
||||||||||| ||| |||| ||||||||||| ||| || ||| || |||||||||||
Sbjct 1438 TTCTTCTTTTGTGTGCTTTT-CTAATTTCTAGG-GTTATT--CTT-CTTTGTGATCGGTT 1492
Query 1463 TAGATTTAATTATGTCGAATTCATAGACTAAACGATGTTCTTATTGTTGAGGTCATTGGG 1522
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TAGATTTAATCATGTCGAAGTCATAGACTAAACGATGTTCTTATTGTTGAGGTCATTGGG 1552
Query 1523 ATTAAAATTTAGTAAGACTATTGT 1546
||| ||||||||||||||| ||||
Sbjct 1553 ATTCAAATTTAGTAAGACTTTTGT 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5