BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496406
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62290.1 | Symbols: | nucleotide-sensitive chloride conduct... 1114 0.0
> AT5G62290.1 | Symbols: | nucleotide-sensitive chloride conductance
regulator (ICln) family protein | chr5:25019487-25021131
FORWARD LENGTH=930
Length=930
Score = 1114 bits (603), Expect = 0.0
Identities = 683/721 (95%), Gaps = 8/721 (1%)
Strand=Plus/Plus
Query 23 ATTGTTTCTTTGTGATCGGAAAACATGGTGGTTGGTCTAAGAGAGTTCACACTCAGAACC 82
||| ||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||
Sbjct 58 ATTCTTTCTTTGTGATCGGAAAAAATGGTGGCTGGTCTAAGAGATTTCACGCTCAGAACC 117
Query 83 GGAGATGGCTCCGGAAAACCGGTTCTGGACGAAGCTAACGGCGAGGAACTTATGCACGTT 142
| |||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 118 GAAGATGGCTCCGGGAAACCGGTACTGGATGAATCTAACGGCGAGGAACTTATGCACGTT 177
Query 143 CAGACTTCCGTCGCCGTCGCTCTCGGAAACCTTCCCGTTGAGTCTCCCGGAACTCTCTAC 202
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 178 CAGACTTCCGTCGCCGTCGCTCTCGGAAACCGTCCCATTGAGTCTCCCGGAACTCTCTAC 237
Query 203 ATCACTTCCAGGAAATTAATTTGGCTGAGCGATGTAGACATGGCTAAAGGTTATGCAGTT 262
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 238 ATCACTTCCAGGAAATTAATTTGGCTGAGCGATGTAGACATGGCTAAAGGATACGCAGTT 297
Query 263 GATTTCTTATCGATATCACTTCACGCTGTTTCTAGAGATCCTGAGGCTTATTCATCTCCT 322
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GATTTCTTATCAATATCGCTTCACGCTGTTTCTAGAGATCCTGAGGCTTATTCATCTCCT 357
Query 323 TGTATATATACTCAGATTG-AGATTGAAGAAGATGAGGATGATGAGTCTGATACAGAATC 381
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 358 TGTATATATACTCAGATTGAAG-TTGAAGAAGATGAGGATGATGAGTCTGATTCAGAATC 416
Query 382 ATCTACTGAAGTTTTGGACTTATCAAATATCAGAGAGATGAGGCTTGTTCCTTCTGACCC 441
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 417 --C-ACTGAAGTTTTGGACTTATCAAAGATCAGAGAGATGAGGCTTGTTCCTTCTGACTC 473
Query 442 TTCCCAGTTGGAGACGCTGTTTGATGTATTCTGCGAGTGTGCTGAGCTGAATCCTGAACC 501
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TACCCAGTTGGAGACGCTGTTTGATGTATTCTGCGAGTGTGCTGAGCTGAATCCTGAACC 533
Query 502 AGTTgaagaagaagaagaagaCCGTGGGCATAATTGGGTGTTTAGTGCTGATCAGATGGA 561
|||| |||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 534 AGTTCAAGAAGAAGAAGAAGAAAGCGGACATAATTGGGTGTTTAGTGCTGATCAGATGGA 593
Query 562 TGTTCGTGGAGGAGCAGATGAAGATGCAGAATGGCAAATATCTCAGAGTCCGACAAGTGT 621
|||||||||| | | |||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 594 TGTTCGTGGA-G-G-AGATGATGATGCAGAGTGGCAAATATCTCAGAGTCCGACTAGTGT 650
Query 622 AATTGGTCATTCCAATGGAGATGAAGGTCTTGCTCAGCCTATGCTTGAGCTCCAAATCAA 681
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 651 AATTGGTCATTCCAATGGAGATGAAGGTCTTAATCAGCCTATGCTTGAGCTCCAAATCAA 710
Query 682 TGATCAGAGGTTTGAGGATGCTGAAGAGATGGTTCATGAAAGTGAGACCAAAGATCACTA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGATCAGAGGTTTGAGGATGCTGAAGAGATGGTTCATGAAAGTGAGACCAAAGATCACTA 770
Query 742 G 742
|
Sbjct 771 G 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5