BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496408
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62300.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 686 0.0
AT3G45030.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 603 8e-172
AT3G47370.2 | Symbols: | Ribosomal protein S10p/S20e family pr... 377 5e-104
> AT5G62300.1 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr5:25021200-25022436 REVERSE LENGTH=658
Length=658
Score = 686 bits (371), Expect = 0.0
Identities = 446/482 (93%), Gaps = 6/482 (1%)
Strand=Plus/Plus
Query 1 CGTCTCTTAGGTTAAAACATTCCAGTCCTTCCTTCCTTGCAGCAAAAAGCAATCCGCCGT 60
|||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 CGTCTCTTAGGTTAAATCATTCGACTCCTTCCTTCCTTGCAGCAAAAAGCAATCCGCCGT 60
Query 61 CAAGCTTCGTTCGTCTCTCAGAAGAAGCTGAAAAATAT---GAC-GTCGTATCAACCAAT 116
| |||||||||||||||||||||||||||| |||||| ||| | |||||||||||||
Sbjct 61 CGAGCTTCGTTCGTCTCTCAGAAGAAGCTG-CAAATATGGCGACAG-CGTATCAACCAAT 118
Query 117 GAAACCAGGAAAGGCTGGTTTGGAAGAACCACTCGAGCAGATTCACAAGATCAGGATTAC 176
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 119 GAAACCAGGGAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCACAAGATCAGAATTAC 178
Query 177 TCTCTCTTCCAAGAATGTCAAGAACCTCGAGAAAGTGTGCACTGATTTGGTCCGTGGAGC 236
|||||| |||||||||||||||||| | || |||||||| ||||||||||| ||||||||
Sbjct 179 TCTCTCCTCCAAGAATGTCAAGAACTTGGAAAAAGTGTGTACTGATTTGGTTCGTGGAGC 238
Query 237 CAAGGACAAGAGACTCAGAGTCAAGGGACCAGTGAGAATGCCCACCAAGGTTCTTAAGAT 296
|||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct 239 TAAGGACAAGAGACTGAGAGTTAAGGGTCCAGTCAGAATGCCCACCAAGGTTCTCAAGAT 298
Query 297 CACTACCCGAAAAGCTCCTTGTGGTGAAGGAACCAACACATGGGACAGATTTGAACTTCG 356
||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 299 CACTACCCGTAAAGCTCCTTGTGGTGAAGGAACCAACACATGGGACAGATTCGAGCTTAG 358
Query 357 GGTACACAAGCGAGTGATTGATCTCTTCAGTTCTCCTGATGTGGTCAAGCAGATCACTTC 416
||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 359 GGTACACAAGCGAGTTATAGATCTTTTCAGCTCTCCTGATGTGGTCAAGCAGATCACCTC 418
Query 417 CATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCCGACTCGTAGATCAACCC 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 CATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCTGACTCGTAGATCAACCC 478
Query 477 TT 478
||
Sbjct 479 TT 480
> AT3G45030.1 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr3:16471386-16472393 REVERSE LENGTH=676
Length=676
Score = 603 bits (326), Expect = 8e-172
Identities = 496/570 (87%), Gaps = 44/570 (8%)
Strand=Plus/Plus
Query 36 CTTGCAGCAAAAAGCAATCCGCCGTC-A----AGCTTCGTTCGTCTCTCAGAAGAAGCTG 90
|||| |||||||||| |||||||||| | ||||||||||||||||| ||
Sbjct 26 CTTGAAGCAAAAAGCTATCCGCCGTCGACTCGAGCTTCGTTCGTCTCTC------TGC-- 77
Query 91 AAAAAT-ATGAC-GTCGTATCAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAACCAC 148
||| || ||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 78 AAATATGGCGACAG-CGTATCAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAGCCAC 136
Query 149 TCGAGCAGATTCACAAGATCAGGATTACTCTCTCTTCCAAGAATGTCAAGAACCTCGAGA 208
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 137 TCGAGCAGATTCACAAGATCAGGATTACTCTCTCCTCCAAGAATGTCAAGAACCTTGAGA 196
Query 209 AAGTGTGCACTGATTTGGTCCGTGGAGCCAAGGACAAGAGACTCAGAGTCAAGGGACCAG 268
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 197 AAGTGTGCACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTCAAGGGACCAG 256
Query 269 TGAGAATGCCCACCAAGGTTCTTAAGATCACTACCCGAAAAGCTCCTTGTGGTGAAGGAA 328
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 257 TGAGAATGCCCACTAAGGTTCTCAAGATCACTACCCGAAAAGCTCCCTGTGGTGAAGGAA 316
Query 329 CCAACACATGGGACAGATTTGAACTTCGGGTACACAAGCGAGTGATTGATCTCTTCAGTT 388
|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 317 CCAATACATGGGACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCT 376
Query 389 CTCCTGATGTGGTCAAGCAGATCACTTCCATCACCATTGAACCTGGTGTTGAAGTTGAGG 448
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 377 CTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTTGAGG 436
Query 449 TCACCATCGCCGACTCGTAGATCAAC-C-CTTAAGAAACAATCT-TCTTTTCCTCGGTTC 505
||||||||||||||||||||||| || | |||| | ||| | |||| ||| ||
Sbjct 437 TCACCATCGCCGACTCGTAGATCGACTCTCTTA-----CT-TCTGT-TTTTGCTC--TT- 486
Query 506 GTAACTACACTCCTTTTGAGTTGCATAAACAAATGTTTTGTTGTAGTGAAATTCAAGTTC 565
| || | | ||| || | || |||||||||||||||| ||||| ||||||||
Sbjct 487 -T--CT-C--T--TTTA-AG----A-AA-CAAATGTTTTGTTGTACTGAAACTCAAGTTC 531
Query 566 TTGTGTTTTCTTAATTAAATAGATTTTGAA 595
|| ||||||||||||| |||||||||||||
Sbjct 532 TTTTGTTTTCTTAATTGAATAGATTTTGAA 561
> AT3G47370.2 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr3:17453478-17454662 REVERSE LENGTH=620
Length=620
Score = 377 bits (204), Expect = 5e-104
Identities = 314/368 (85%), Gaps = 4/368 (1%)
Strand=Plus/Plus
Query 104 CGTATCAACCAATGAA-ACCAGGAAAGGCTGGTTTGGAAGAACCACTCGAGCAGATTCAC 162
||||| |||| ||||| ||| |||| ||||||||||| | || || |||||||||||
Sbjct 63 CGTATGAACCGATGAAGCCCACGAAA-GCTGGTTTGGAGGCTCCTCTGGAGCAGATTCAT 121
Query 163 AAGATCAGGATTACTCTCTCTTCCAAGAATGTCAAGAACCTCGAGAAAGTGTGCACTGAT 222
||||||||||| ||||||||||| || ||||| |||||| | || |||||||||||||||
Sbjct 122 AAGATCAGGATCACTCTCTCTTCAAAAAATGTGAAGAACTTGGAAAAAGTGTGCACTGAT 181
Query 223 TTGGTCCGTGGAGCCAAGGACAAGAGACTCAGAGTCAAGGGACCAGTGAGAATGCCCACC 282
|||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 182 TTGGTCCGTGGAGCTAAGGATAAGAGACTTAGAGTTAAGGGACCAGTGAGAATGCCCACT 241
Query 283 AAGGTTCTTAAGATCACTACCCGAAAAGCTCCTTGTGGTGAAGGAACCAACACATGGGAC 342
||||||||||||||||||||| |||| || |||||||||||||| ||||| || ||||||
Sbjct 242 AAGGTTCTTAAGATCACTACCAGAAAGGCACCTTGTGGTGAAGGTACCAATACTTGGGAC 301
Query 343 AGATTTGAACTTC-GGGTACACAAGCGAGTGATTGATCTCTTCAGTTCTCCTGATGTGGT 401
|| ||||| || | |||| |||||||| || || ||||||||||| || ||||| || ||
Sbjct 302 AGGTTTGAGCT-CAGGGTTCACAAGCGTGTCATCGATCTCTTCAGCTCCCCTGACGTTGT 360
Query 402 CAAGCAGATCACTTCCATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCCGA 461
||||| ||||| || ||||||||||| || |||||||| || |||||||| || || ||
Sbjct 361 TAAGCAAATCACGTCTATCACCATTGAGCCCGGTGTTGAGGTCGAGGTCACTATTGCTGA 420
Query 462 CTCGTAGA 469
||| ||||
Sbjct 421 CTCTTAGA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5