BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496412
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62350.1 | Symbols: | Plant invertase/pectin methylesterase... 1212 0.0
> AT5G62350.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:25037426-25038362 FORWARD
LENGTH=937
Length=937
Score = 1212 bits (656), Expect = 0.0
Identities = 775/831 (93%), Gaps = 14/831 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaTCACCAATGGCAAAACAATATTTCTTTCTAATCCTCTCACTCTCCTACCTCTT 60
|||||||||||||||||||||||||||| ||||| || |||||||| ||||||| |||||
Sbjct 66 AAAAAAATCACCAATGGCAAAACAATATCTCTTTGTACTCCTCTCAATCTCCTATCTCTT 125
Query 61 CTCACCGGAGCTCACGGCGGCCACCGCAGCCTCACAGGCCGGAGCTTCCAAGAAAGCCAT 120
|||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 126 ATCACTGGAGCTCACGGCGGCCACCGCAGCCTCACAGACCGGAGCTTCCAAAAAAGCCAT 185
Query 121 CAACTTCATCCAATCTTCTTGCAAAGCCACCACATACCCAGCCTTATGCGTCCACTCACT 180
|||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 186 AAACTTCATCCAATCTTCTTGCAAAACCACCACATACCCTGCCTTATGTGTCCACTCACT 245
Query 181 CTCCATCTACGCAAATGACATCCAAACAAGCCCTAAACGTTTAGCTGAGACCGCTCTAGC 240
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 246 CTCCGTCTACGCAAACGACATCCAAACAAGCCCTAAACGTTTAGCTGAGACCGCTATAGC 305
Query 241 CGTGACACTAAACCGAGCCCAATCCACGAAGCTCTTTGTCTCGCGTCTAACACGTATGAA 300
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 306 CGTGACACTAAGCCGAGCCCAATCCACGAAGCTCTTCGTCTCGCGTCTAACACGTATGAA 365
Query 301 GGGCCTTAAGAAGCGTGAGGTCGAAGCCGTCAAAGATTGCGTCGAGGAGATCAACGATAC 360
||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 366 GGGTCTTAAGAAGCGCGAGGTCGAAGCCATCAAAGATTGCGTCGAGGAGATGAACGATAC 425
Query 361 CGTTGACCGTTTGACCAAATCTGTTCAAGAACTGAAGTTATGTGGTAGTGCCAAAGATCA 420
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 426 CGTTGACCGTTTGACCAAATCTGTTCAAGAACTGAAGTTGTGTGGGAGTGCCAAAGATCA 485
Query 421 AGACCAGTTTGCGTACCACATGAGTAATGCTCAGACTTGGACTAGTGCGGCTTTGACCGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 486 AGACCAGTTTGCGTACCACATGAGTAATGCTCAGACTTGGACTAGTGCGGCTTTGACTGA 545
Query 481 CGAGAACACTTGCTCCGATGGATTCTCGGGTCGGGTTATGGATGGGAGGATCAAGAACTC 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 546 CGAGAACACTTGCTCCGATGGGTTCTCGGGTCGGGTTATGGATGGGAGGATCAAGAACTC 605
Query 541 GGTTCGGGCTAGAATCATGAACGTGGGCCACGAAACTAGCAACGCTTTGTCCTTGATTAA 600
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 606 GGTTCGGGCTAGAATCATGAACGTGGGACATGAAACCAGCAACGCTTTGTCCTTGATTAA 665
Query 601 TGCCTTTGCTAAAACTTACTAATTTTAAACTATATTTTGTCCTGTAAAATAGATCTA--G 658
||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |
Sbjct 666 TGCCTTTGCTAAAACTTACTAATTTAAAACTATATTTTGTCCTGTAAAATATATATATAG 725
Query 659 ATAAATGTAATGTCTTGCTAAGAGTTTGGTGTGATATACtttt--cgtttttgttagttt 716
|||||||||||||||||||||||||||| ||||||||| |||| || ||||| ||||||
Sbjct 726 ATAAATGTAATGTCTTGCTAAGAGTTTGATGTGATATATTTTTTTCGATTTTGGTAGTTT 785
Query 717 ctttttgttttgtat-gtggtttataaatagtattatgtgtattttgAGCTATAAAGTTG 775
|||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 786 CTTTTTGTTTTGTAACGTGGTTTATAA-TAGTATAATGTGTATTTTGAGCTATAAAGTTG 844
Query 776 TTTTTAAGAAAACAGATTTGGATATATTTCCCCAAACAAATTGTAGCTAGT 826
||||||||| || ||||| ||| |||| ||||||| |||||||||
Sbjct 845 TTTTTAAGA-------TT-GGATAAATTGCCCCCAACAAATGGTAGCTAGT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5