BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496413
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62360.1 | Symbols: | Plant invertase/pectin methylesterase... 822 0.0
> AT5G62360.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:25040649-25041462 FORWARD
LENGTH=814
Length=814
Score = 822 bits (445), Expect = 0.0
Identities = 561/613 (92%), Gaps = 23/613 (4%)
Strand=Plus/Plus
Query 1 ATGGGTGAATCTTTTA-A--ATTCAACCATCATCACTTCCTCACGTCTCTTCTCGTAATC 57
|||||||||||||||| | |||||| ||||||||||||||||| || ||||| |||||
Sbjct 51 ATGGGTGAATCTTTTAGATTATTCAATCATCATCACTTCCTCACAACTTTTCTCATAATC 110
Query 58 ATAGCCATTCTCAAATCGG-T--T-------------C-A-Tacaacaacaacaacaaac 99
|||||||| ||||||| || | | | | |||||||||||||||||||
Sbjct 111 ATAGCCATGCTCAAATTGGTTCATACAACAACAACAACAACTACAACAACAACAACAAAC 170
Query 100 aCCGAGTTCGTAAAATCATCATGCACTTTCACAACGTACCCAAGACTCTGTTTCTCTTCA 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 ACCGAGTTCGTAAAATCATCATGCACTTTCACAACGTACCCAAGACTCTGTTTCTCTTCA 230
Query 160 CTCTCAACTCATGCCAGTCTCATCCAAACAAGCCCCAAGCTCATGGCTCACGCGGCTCTC 219
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 231 CTCTCAACTCATGCTAGTCTCATCCAAACAAGCCCCAAGCTCATGGCTCATGCGGCTCTC 290
Query 220 AACATAACATTAGCCTCTGCTAAAGCAACTTCAGCAATGATGGTGCGTCTGTCAAATAGT 279
||||| ||||||||||| ||||||| |||||||||||||||||||||||| || ||||||
Sbjct 291 AACATCACATTAGCCTCGGCTAAAGTAACTTCAGCAATGATGGTGCGTCTCTCGAATAGT 350
Query 280 CGGCTCAAGCC-AAGAGAAGTCTCGGCCATGAGAGACTGCGTCGAGGAGTTAGGTGACTC 338
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 351 CGGCTCAAGCCTAA-AGAAGTCTCGGCCATGAGAGACTGCGTCGAGGAGTTAGGTGACAC 409
Query 339 GTTGGAGGAGCTTAGAAAATCGATTGGTGAGATGTGTCGGCTAAGTGGCTCGAACTATGA 398
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 410 GTTGGAGGAGCTTAGGAAATCGATTGGTGAGATGTGTCAGCTAAGTGGCTCGAACTATGA 469
Query 399 GGTCTACATGAGCGATATACAGACTTGGGTCAGTGCGGCTTTGACAGATGTGAACACATG 458
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGTTTACATAAGCGATATACAGACTTGGGTCAGTGCGGCTTTGACAGATGTGAACACATG 529
Query 459 TACGGATGGATTTGAAGGAGACGACATGAATGGGAAGGTTAAGGTTTTGGTTAGAGGGAG 518
||| || |||||||||||||| || ||| | |||||||||||||||||||||||||||||
Sbjct 530 TACTGACGGATTTGAAGGAGAAGATATGGACGGGAAGGTTAAGGTTTTGGTTAGAGGGAG 589
Query 519 AATTTTGGTTATTGCTCATTTAACGAGTAATGCTTTGGCTTTGATTAATCACTTTGCTTC 578
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 590 GATTTTGGTTATTGCTCATTTAACAAGTAATGCTTTAGCTTTGATTAATCACTTTGCTTC 649
Query 579 TATTCATGGCTAA 591
|||||||||||||
Sbjct 650 TATTCATGGCTAA 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5