BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496418
Length=3665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structura... 5877 0.0
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chrom... 3567 0.0
> AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056262-25062625 FORWARD
LENGTH=3763
Length=3763
Score = 5877 bits (3182), Expect = 0.0
Identities = 3508/3663 (96%), Gaps = 32/3663 (1%)
Strand=Plus/Plus
Query 1 GAAGAAGAAGGAAGATGCATATAAAAGAGATATGCTTGGAGGGTTTCAAATCATACGCGA 60
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 33 GAAGAAGAAGGAAGATGCATATAAAGGAGATATGCTTGGAGGGTTTTAAATCATACGCGA 92
Query 61 CGAGGACTGTGGTTTCTGGTTTCGATCCACATTTCAACGCAATAACGGGTCTGAATGGTT 120
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 93 CGAGGACGGTGGTTTCTGGTTTCGATCCACATTTCAACGCGATAACGGGTCTGAATGGTT 152
Query 121 CGGGCAAATCCAACATCCTCGATTCCATCTGTTTCGTTCTGGGTATCACTAATCTTCAGC 180
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 153 CGGGAAAATCCAACATCCTCGATTCCATCTGTTTCGTTCTGGGTATCACCAATCTTCAGC 212
Query 181 AGGTTCGAGCTGCGAATCTTCAGGAGCTCGTCTACAAGCAAGGCCAAGCTGGGATTACCA 240
| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 213 AAGTTCGAGCTGCTAATCTTCAGGAACTCGTCTATAAGCAAGGCCAAGCTGGGATTACTA 272
Query 241 AAGCGACTGTGTCGGTTACCTTTGACAATTCCGAGAGACACAGGAGCCCTCTCGGCTACG 300
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 273 AGGCGACTGTCTCGGTTACCTTTGACAATTCCGAGAGACACAGAAGCCCTCTCGGCTACG 332
Query 301 AAGAACATCCGGAGATTACTGTGACTAGACAAATTGTAGTTGGTGGTCGGAACAAGTATT 360
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 333 AAGAACATCCAGAGATTACTGTGACTAGACAAATTGTAGTTGGTGGAAGGAACAAGTATT 392
Query 361 TGATAAATGGGAAGCTAGCACAACCAAGTCAAGTTCAGAATCT-TTTCCACTCGGTGCAG 419
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 393 TGATAAATGGGAAGCTAGCACAACCAAGTCAAGTTCAGAATCTATTT-CACTCGGTGCAG 451
Query 420 CTTAATGTCAACAATCCACACTTTCTCATCATGCAAGGGCGTATCACCAAAGTCTTAAAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 452 CTTAATGTCAACAATCCACACTTTCTCATCATGCAAGGGCGTATCACCAAAGTTTTGAAT 511
Query 480 ATGAAACCTCCGGAGATATTGTCCATGCTTGAAGAAGCTGCTGGAACAAGAATGTATGAA 539
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 512 ATGAAGCCTCCGGAGATATTGTCCATGCTTGAAGAAGCTGCTGGAACAAGGATGTATGAA 571
Query 540 AACAA-AAAGGAAGCTGCATTGAAAACGCTTGaaaaaaaGCAGACCAAGGTTGATGAGAT 598
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AACAAGAAA-GAGGCTGCATTGAAAACGCTTGAAAAAAAGCAGACCAAGGTTGATGAGAT 630
Query 599 TAATAAGCTCCTTGATCATGAAATATTGCCGGCGCTCGAGAAGTTGAGGAAAGAAAAATC 658
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 631 TAATAAGCTTCTTGATCATGAAATATTGCCGGCTCTCGAGAAGTTGAGGAAAGAAAAATC 690
Query 659 ACAATACATGCAGTGGGCTAATGGTAACGCGGAACTCGATCGACTAAGGAGATTCTGTAT 718
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 691 ACAGTACATGCAGTGGGCTAATGGTAACGCGGAGCTAGATCGACTAAGGAGATTCTGTAT 750
Query 719 TGCCTTTGAATATGTTCAAGCAGAGAAGATTAGAGACAGTGCTGTTCTTGGAGTTGGAGA 778
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 751 TGCCTTTGAATATGTTCAAGCGGAGAAGATTAGAGACAATGCTGTTCTTGGAGTTGGAGA 810
Query 779 AATGAAGGCGAAGCTCACTAAGATTGACGAGGAAACAGAAAAGACACAGGGAGAAATACA 838
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct 811 AATGAAGGCGAAGCTCGGGAAGATTGACGCGGAAACAGAAAAGACACAGGAAGAAATACA 870
Query 839 GGAAATTGAGAAACATATAAAAGCTCTGACTCGGGCAAAGGAAGCCAGTATGGGGGGAGA 898
|||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 871 GGAATTTGAGAAACAGATAAAAGCTCTGACTCAGGCAAAGGAAGCCAGTATGGGGGGAGA 930
Query 899 AGTAAAAACTCTGTCAGAAAAAGTGGATTCACTAGCTCAAGAAATGACACGTGAGTCATC 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 931 AGTAAAAACTCTGTCAGAAAAAGTGGATTCACTGGCTCAAGAAATGACACGTGAGTCATC 990
Query 959 TAAACTTAATAACAAGGAGGACACCCTTCTGGGAGAAAAAGAGAATGCTGAAAAGATTGT 1018
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 991 TAAACTTAATAACAAGGAGGACACCCTTCTGGGAGAAAAAGAGAATGTTGAAAAGATTGT 1050
Query 1019 TCACAATATAGAAGATTTAAAGAAATCCGTAAAAGAGAGGGCCGCTGCTGTGAAGAAGTC 1078
||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1051 TCACAGTATAGAAGATTTAAAGAAATCCGTAAAGGAGAGAGCCGCTGCTGTGAAGAAGTC 1110
Query 1079 TGAGGAAGGAGCGGCAGACCTAAAACAAAGATTCCAGGAACTCTCCACCACATTGGAAGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGAGGAAGGAGCGGCAGACCTAAAACAAAGATTCCAGGAACTCTCCACCACATTGGAAGA 1170
Query 1139 GTGTGAAAAGGAACACCAGGGCGTACTAGCTGGTAAGAGTAGTGGAGATGAAGAGAAATG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GTGTGAAAAGGAACACCAGGGCGTACTAGCTGGTAAGAGTAGTGGAGATGAAGAGAAATG 1230
Query 1199 CTTAGAAGATCAACTACGGGATGCAAAGATTGCTGTTGGAACAGCTGGAACAGAGTTGAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 CTTAGAAGATCAACTACGGGATGCAAAGATTGCTGTTGGAACAGCTGGAACAGAGTTGAA 1290
Query 1259 ACAGCTGAAAACCAAAATAGAACACTGTGAAAAGGAGCTAAATGATAGAAAGTCTCAGTT 1318
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1291 ACAGCTAAAAACCAAAATAGAACACTGTGAAAAGGAGCTAAAGGAGAGAAAGTCTCAGTT 1350
Query 1319 AATGTCAAAACGTGAAGAAGCCATTGAAGTGGAGAATGAACTTAGAGCTAGGAAAAATGA 1378
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1351 AATGTCAAAACTTGAAGAAGCCATTGAAGTGGAGAATGAACTTGGAGCTAGGAAAAATGA 1410
Query 1379 TGTGGAACGTGTAAAAAAGGCACTTGAATCTATTCCTTATAATGAGGGTCAAATGGAAGC 1438
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1411 TGTGGAACATGTAAAAAAGGCACTTGAATCTATTCCTTATAACGAGGGTCAAATGGAAGC 1470
Query 1439 TTTGGAGAAGGACCGCGGAGCTGAACTTGAAGTTGTGCAAAGGCTGGAAGATAAAGTGCG 1498
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1471 TTTGGAGAAGGACCGTGGAGCCGAACTTGAAGTTGTGCAGAGGCTGGAAGATAAAGTGCG 1530
Query 1499 TGGTTTATCAGCTCAATTAGCAAATGTTCAGTTTACATACCGCGATCCTGTGAGGAACTT 1558
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1531 TGGCTTATCAGCTCAATTAGCAAATTTTCAGTTTACATACAGCGATCCTGTGAGGAACTT 1590
Query 1559 TGACCGATCTAAGGTGAAAGGTGTGGTCGCAAAACTGATAAAAGTAAAAGATAGGTCCTC 1618
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1591 TGACCGATCTAAGGTGAAAGGTGTGGTCGCAAAACTAATAAAAGTAAAAGATAGGTCCTC 1650
Query 1619 AATGACAGCCTTGGAGGTTACTGCTGGTGGGAAGTTGTATAATGTTGTTGTAGACTCAGA 1678
||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1651 AATGACAGCGTTGGAGGTTACTGCTGGTGGCAAGTTGTATGATGTTGTTGTAGACTCAGA 1710
Query 1679 AGATACTGGAAAACAGCTCCTTCAAAACGGTGCTCTTAGGAGAAGAGTTACAATCATACC 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1711 AGATACTGGAAAACAGCTCCTTCAAAACGGTGCTCTTAGGAGAAGAGTTACAATTATACC 1770
Query 1739 TCTGAACAAAATCCAATCTTATGTTGTTCAGCCTAGAGTGCAGCAAGTGACTGCTAGATT 1798
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1771 TCTGAACAAAATCCAATCTTACGTTGTTCAGCCTAGAGTGCAGCAAGCGACTGCTAGATT 1830
Query 1799 GGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAAA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAAA 1890
Query 1859 GAATGCCATTGAGTATGTTTTTGGTTCCACTTTTGTTTGCAAAACTACTGATGCGGCTAA 1918
||||||||| || ||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 1891 GAATGCCATGGAATATGTTTTTGGCTCCACTTTTGTTTGCAAAACTACTGATGTAGCAAA 1950
Query 1919 GGAAGTAGCATTTAATCGGGATATTCGGACTCCAAGTGTCACACTTGAAGGTGATATTTT 1978
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1951 GGAAGTTGCTTTTAATCGGGATATTCGGACTCCAAGTGTCACACTTGAAGGTGACATTTT 2010
Query 1979 CCAGCCAAGTGGTCTTCTTACTGGTGGGAGTCGCAAAGGTGGAGGTGATCTCCTTAGGCA 2038
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
Sbjct 2011 CCAGCCAAGTGGTCTTCTTACTGGTGGGAGTCGCAAGGGTGGAGGTGATCGCCTTAGGAA 2070
Query 2039 ACTTCATGACCTGGCAGAAGCTGAATCAAAATTACAAGGACACCAAAAAAGGTTGGATGA 2098
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2071 ACTTCATGACCTGGCAGAAGCTGAATCAGAATTACAAGGACACCAAAAAAGGTTGGCTGA 2130
Query 2099 CATTGAAGCACAGATCAAAGAGCTTCAGCCTCTTCAAAAGAAATTCACAGATGTTAATGC 2158
| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2131 CGTTGAATCACAGATCAAAGAGCTTCAGCCTCTTCAAATGAAATTCACAGATGTTTATGC 2190
Query 2159 ACAGTTGGAGCTAAAAACGTACGACTTGTCCTTATTTTTGAAGAGGGCTGAACAGAATGA 2218
|||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2191 ACAGTTGGAGCTGAAGACGTATGACTTGTCCTTATTTTTGAAGAGGGCTGAACAAAATGA 2250
Query 2219 GCATCACAAGCTTGGCGAAGCAGTaaaaaaaCTTGAAGAAGAGCTTGAAGCAGCGAAATT 2278
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 2251 GCATCACAAGCTTGGCGAAGCTGTAAAAAAACTTGAAGAAGAGCTTGAAGAAGCGAAATC 2310
Query 2279 CCAAATCAAAGAGAAGGAACTTGCTTATAAAAATTGTGTTGATGCTGTTTCCAAACTAGA 2338
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2311 CCAAATCAAAGAGAAGGAACTTGCTTATAAAAATTGTTTTGATGCTGTTTCCAAACTAGA 2370
Query 2339 GAATTCCATCAAAGACCATGACAAAAACAGAGAAGGAAGACTCAAGGACTTGGaaaaaaa 2398
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2371 GAATTCCATCAAAGACCATGACAAAAACAGAGAAGGAAGACTTAAGGACTTGGAAAAAAA 2430
Query 2399 TATTAAGACCATCAAAGCTCAAATGCAGGCAGCTTCCAAAGATTTAAAGAGTCATGAAAA 2458
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 TATTAAAACCATCAAAGCTCAAATGCAGGCAGCTTCCAAAGATTTAAAGAGTCATGAAAA 2490
Query 2459 TGAAAAAGAGAAGCTTGTGATGGAGAAAGACGCAATGGGGAAAGAACAGTCGTCCTTGGA 2518
||||||||||||||||||||||||| |||| |||||| | ||||||| |||||||||||
Sbjct 2491 TGAAAAAGAGAAGCTTGTGATGGAGGAAGAAGCAATGAAGCAAGAACAATCGTCCTTGGA 2550
Query 2519 GAGCCACTTAGCTTCATTGGAAACCCAAATTAGCACTCTGACTTCGGAAGTAGACGAGCA 2578
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2551 GAGCCACTTAACTTCATTGGAAACCCAAATCAGCACTCTGACTTCGGAAGTAGACGAGCA 2610
Query 2579 GCGAGCCAAGGTTGATGCCTTACAGAAGATTCATGATGAGTCTCTTGCCGAGCTCAAGTT 2638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2611 GCGAGCCAAGGTTGATGCCTTACAGAAGATTCATGATGAGTCTCTTGCCGAGCTCAAGTT 2670
Query 2639 GATACATGCAAAGATGAAGGAATGTGATACACAGATAAGTGGTTTTGTCACTGCCCAGGA 2698
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2671 GATACATGCAAAGATGAAGGAATGTGATACACAGATAAGTGGTTTTGTCACTGACCAGGA 2730
Query 2699 AAAGTGTCTGCAGAAGCTTAGTGACATGAAACTTGAGAGAAAGAAATTGGAAAATGAGGT 2758
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2731 AAAGTGTCTGCAGAAGCTTAGTGACATGAAGCTTGAGAGAAAGAAATTGGAAAATGAGGT 2790
Query 2759 CGTAAGGATGGAGACGGATCACAAGGATTGTTCCGTGAAGGTAGACAAACTTGTTGAGAA 2818
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2791 CGTAAGGATGGAAACGGATCACAAGGACTGTTCCGTGAAAGTAGACAAACTTGTTGAGAA 2850
Query 2819 GCATACATGGATAGCATCTGAAAAGCAACTTTTTGGAAAAGGAGGGACAGATTATGATTT 2878
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2851 GCATACATGGATAGCATCTGAAAAGCAACTTTTTGGGAAAGGAGGGACAGATTATGATTT 2910
Query 2879 TGAATTTTGTGATCCGTATGTAGCCAGACAAAAACTTGAAAAGCTCCAGTCAGATCAATC 2938
||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 2911 TGAATCTTGTGATCCGTATGTGGCCAGAGAAAAACTTGAAAAGCTCCAATCAGATCAATC 2970
Query 2939 AGGCTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGA 2998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2971 AGGCTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGA 3030
Query 2999 ATACAATGCTCTGATATCGAAGAAAAATACTATCGAGAATGACAAATCAAAAATCACAAA 3058
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 3031 ATACAATGCTCTGATATCGAAAAAAAATACTATCGAGAATGACAAATCAAAAATCACGAA 3090
Query 3059 AGTGATTGAGGAGCTTGATGAGAAGAAAAAAGAAACCCTGAAAGTCACGTGGGTTAAAGT 3118
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 3091 AGTGATCGAGGAGCTTGATGAGAAGAAAAAAGAAACCCTGAAAGTTACTTGGGTTAAAGT 3150
Query 3119 TAACCAGGATTTCGGATCAATCTTTTCAACTCTACTACCTGGCACCATGGCAAAACTAGA 3178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3151 TAACCAGGATTTCGGATCAATCTTTTCAACTCTACTACCTGGCACCATGGCAAAACTAGA 3210
Query 3179 ACCTCCTGAAGGCGGTAGCTTCCTTGATGGTCTTGAGGTGCGTGTTGCCTTTGGAAAAGT 3238
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3211 ACCTCCTGAAGACGGTAACTTCCTTGATGGTCTTGAGGTGCGTGTTGCCTTTGGAAAAGT 3270
Query 3239 CTGGAAGCAGTCTTTATCAGAACTCAGTGGAGGGCAAAGATCACTTCTTGCGCTATCACT 3298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3271 CTGGAAGCAGTCTTTATCAGAACTCAGTGGAGGGCAAAGATCTCTTCTTGCGCTATCACT 3330
Query 3299 AATATTGGCATTGCTTCTCTTCAAACCGGCTCCTCTTTATATATTAGACGAGGTTGATGC 3358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3331 AATATTGGCATTGCTTCTCTTCAAACCGGCTCCTCTTTATATATTAGATGAGGTTGATGC 3390
Query 3359 AGCTCTTGATCTCAGTCACACACAGAACATAGGAAGAATGATAAAAGCTCATTTCCCTCA 3418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3391 AGCTCTTGATCTCAGTCACACACAGAACATAGGAAGAATGATAAGAGCTCATTTCCCTCA 3450
Query 3419 CTCGCAGTTTATCGTGGTTTCGCTGAAAGAAGGAATGTTCAACAACGCCAATGTTCTTTT 3478
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3451 CTCGCAGTTTATCGTGGTTTCGCTGAAAGAAGGAATGTTCAACAATGCCAATGTTCTTTT 3510
Query 3479 CCGGACAAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACAGTAACAAAGCAGACCAA 3538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3511 CCGGACAAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACAGTAACAAAGCAGACCAA 3570
Query 3539 GTGATAAT-C--A--C-T-AT--G--CA---------G-ATT----TT--GCAATCCCAT 3571
|||||| | | | | | || | || | ||| || ||||| ||||
Sbjct 3571 GTGATA-TGCTTATACGTCATTAGATCAATCCAATCAGTATTCAGATTTTGCAATTCCAT 3629
Query 3572 TTGGCCGTTTCCTTCTAGCATTCTCTTTGTATTGAAAATCAAGATCTTTGTGTAGAATAT 3631
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 3630 TTGGCCGTTTCCGTCTAACATTTTCTTTGTATTGAAAATCAAGATCTTTGTGTAGAATAT 3689
Query 3632 GAC 3634
|||
Sbjct 3690 GAC 3692
> AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromosomes
(SMC) family protein | chr3:17486765-17493395 FORWARD
LENGTH=3733
Length=3733
Score = 3567 bits (1931), Expect = 0.0
Identities = 3026/3554 (85%), Gaps = 77/3554 (2%)
Strand=Plus/Plus
Query 15 ATGCATATAAAAGAGATATGCTTGGAGGGTTTCAAATCATACGCGACGAGGACTGTGGTT 74
||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || |||
Sbjct 1 ATGCATATAAAGGAGATATGCTTGGAAGGTTTCAAATCATACGCAACGAGGACAGTAGTT 60
Query 75 TCTGGTTTCGATCCACATTTCAACGCAATAACGGGTCTGAATGGTTCGGGCAAATCCAAC 134
| ||||| || || ||||||||||| || |||||||| || || || || |||||||||
Sbjct 61 CCGGGTTTTGACCCGCATTTCAACGCGATTACGGGTCTAAACGGATCCGGAAAATCCAAC 120
Query 135 ATCCTCGATTCCATCTGTTTCGTTCTGGGTATCACTAATCTTCAGCAGGTTCGAGCTGCG 194
||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 121 ATCCTCGATTCCATCTGCTTCGTTCTAGGTATCACTAATCTTCAACAAGTTCGAGCTGCT 180
Query 195 AATCTTCAGGAGCTCGTCTACAAGCAAGGCCAAGCTGGGATTACCAAAGCGACTGTGTCG 254
||||| ||||| ||||| ||||||||||| |||||||| || || | ||| ||||| ||
Sbjct 181 AATCTACAGGAACTCGTTTACAAGCAAGGACAAGCTGGAATCACTAGAGCCACTGTTTCA 240
Query 255 GTTACCTTTGACAATTCCGAGAGACA-CAGGAGCCCTCTCGGCT-ACGAAGAACATCCGG 312
|||||||| ||||||||||||||| | | | || ||| | || | | ||||| ||| | |
Sbjct 241 GTTACCTTCGACAATTCCGAGAGAAATC-GAAGTCCTTTAGG-TCATGAAGATCATTCAG 298
Query 313 AGATTACTGTGACTAGACAAATTGTAGTTGGTGGTCGGAACAAGTATTTGATAAATGGGA 372
||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 299 AGATTACAGTAACTAGACAAATTGTAGTTGGTGGAAAGAACAAGTATTTGATCAATGGGA 358
Query 373 AGCTAGCACAACCAAGTCAAGTTCAGAATCTTTTCCACTCGGTGCAGCTTAATGTCAACA 432
|||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 359 AGCTTGCACAACCAAATCAAGTTCAGAATCTTTTCCATTCGGTGCAGCTTAATGTGAACA 418
Query 433 ATCCACACTTTCTCATCATGCAAGGGCGTATCACCAAAGTCTTAAATATGAAACCTCCGG 492
|||| || ||||| || |||||||||||||| |||||||| ||||| ||||||||| ||
Sbjct 419 ATCCTCATTTTCTGATTATGCAAGGGCGTATTACCAAAGTTTTAAACATGAAACCTATGG 478
Query 493 AGATATTGTCCATGCTTGAAGAAGCTGCTGGAACAAGAATGTATGAAAACAA-AAAGGAA 551
|||| || || |||||||||||||||||||| || ||||||||||| || || ||| ||
Sbjct 479 AGATTTTATCTATGCTTGAAGAAGCTGCTGGTACGAGAATGTATGAGAATAAGAAA-GAG 537
Query 552 GCTGCATTGAAA-ACGCTT-GaaaaaaaGCAGACCAAGGTTGATGAGATTAATAAGCTCC 609
||||| || ||| ||| || || |||||||| || ||||||||||||||||||||||| |
Sbjct 538 GCTGCGTT-AAAGACG-TTGGAGAAAAAGCAAACTAAGGTTGATGAGATTAATAAGCTTC 595
Query 610 TTGATCATGAAATATTGCCGGCGCTCGAGAAGTTGAGGAAAGAAAAATCACAATACATGC 669
|||| | || |||||||| || | ||||||||||||| |||||| || || || ||||
Sbjct 596 TTGAGAAAGATATATTGCCAGCTTTGGAGAAGTTGAGGAGAGAAAAGTCGCAGTATATGC 655
Query 670 AGTGGGCTAATGGTAACGCGGAACTCGATCGACTAAGGAGATTCTGTATTGCCTTTGAAT 729
|||||||||||||||| |||||| | ||||| ||| ||| || ||| | || ||||| |
Sbjct 656 AGTGGGCTAATGGTAATGCGGAATTAGATCGGTTAAAGAGGTTTTGTGTCGCTTTTGAGT 715
Query 730 ATGTTCAAGCAGAGAAGATTAGAGACAGTGCTG-TTCTTGGAGTTGGAGAAATGAAGGCG 788
|||| ||||| |||||||||||||| | | | | | | || |||| ||||||||||
Sbjct 716 ATGTGCAAGCGGAGAAGATTAGAGATAATTC-GATACATGTTGTTGAAGAAATGAAGATA 774
Query 789 AAGCTCACTAAG-ATTGACGAGGAAACAGAAAAGACACAGGGAGAAATA-CAGGAAATTG 846
|| | ||| | ||||| ||| | ||||| ||||||||||| |||||| | |||| | |
Sbjct 775 AAAATGACT-GGTATTGATGAGCAGACAGATAAGACACAGGGTGAAATATC-GGAACTGG 832
Query 847 AGAAACATATAAAAGCTCTGACTCGGGCAAAGGAAGCCAGTATGGGGGGAGAAGTAAAAA 906
||||||| || |||||| |||||| |||| |||||| |||||||| ||||||||||||
Sbjct 833 AGAAACAGATTAAAGCTTTGACTCAAGCAAGGGAAGCTAGTATGGGAGGAGAAGTAAAAG 892
Query 907 CTCTGTCAGAAAAAGTGGATTCACTAGCTC-AA-GAAATGACACGTGAGTCATCTAAACT 964
|| |||| || ||||| |||||| | | || || ||| |||||||||| | ||| || ||
Sbjct 893 CTTTGTCTGACAAAGTTGATTCA-TTG-TCTAATGAAGTGACACGTGAATTATCCAAGCT 950
Query 965 TAATAACAAGGAGGACACCCTTCTGGGAGAA-AAAGAGAATGCTGAAAAGATTGTTCACA 1023
|| ||| | |||||||||||||| || ||| ||| |||||||||||||||| ||||| |
Sbjct 951 TACTAATATGGAGGACACCCTTCAAGGCGAAGAAA-AGAATGCTGAAAAGATGGTTCATA 1009
Query 1024 ATATAGAAGATTTAAAGAAATCCGTAAAAGAGAGGGCCGCTGCTGTGAAGAAGTCTGAGG 1083
||||||||||||| |||||||| ||| |||| || || ||||| | || |||| ||| |
Sbjct 1010 ATATAGAAGATTTGAAGAAATCTGTAGAAGAAAGAGCTTCTGCTCTCAACAAGTGTGACG 1069
Query 1084 AAGGAGCGGCAGACCTAAAACAAAGATTCCAGGAACTCTCCACCACATTGGAAGAGTGTG 1143
||||||| ||||| |||||||||| |||||||||| | || |||||||||||||||||||
Sbjct 1070 AAGGAGCAGCAGAACTAAAACAAAAATTCCAGGAATTTTCAACCACATTGGAAGAGTGTG 1129
Query 1144 AAAAG-GAACACCAGGGCGTACTAGCTGGTAAGAGTAGTGGAGATGAAGAGAAATGCT-T 1201
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1130 -AAAGAGAACACCAGGGTATACTAGCTGGTAAGAGTAGTGGAGATGAAGAGAAATG-TCT 1187
Query 1202 AGAAGATCAACTACGGGATGCAAAGATTGCTGTTGGAACAGCTGGAACAGAGTTGAAACA 1261
|||||||||||||| |||||||||||| ||||||||||||||| ||| |||||||| ||
Sbjct 1188 CGAAGATCAACTACGTGATGCAAAGATTTCTGTTGGAACAGCTGAAACGGAGTTGAAGCA 1247
Query 1262 GCTGAAAACCAAAA-TAGAACACTGTGAAAAGGAGCTAAATGATAGAAAGTCTCAGTTAA 1320
|||||| ||||||| ||| |||||||||||||| ||||| || | ||||||||||||||
Sbjct 1248 GCTGAATACCAAAATTAG-TCACTGTGAAAAGGAACTAAAAGAGAAAAAGTCTCAGTTAA 1306
Query 1321 TGTCAAAACGTGAAGAAGCCATTGAAGTGGAGAATGAACTTAGA-GCTAGGAAAAATGAT 1379
||||||||| || ||||| ||| |||||| ||||||||| || ||||| |||||||||
Sbjct 1307 TGTCAAAACAAGACGAAGCTGTTGCAGTGGAAAATGAACTT-GATGCTAGAAAAAATGAT 1365
Query 1380 GTGGAACGTGTAAAAAAGGCACTTGAATCTATTCCTTATAATGAGGGTCAAATGGAAGCT 1439
|| ||| ||||||||| |||| |||| ||| |||| ||||| |||||||| ||||||||
Sbjct 1366 GTAGAAAGTGTAAAAAGGGCATTTGATTCTCTTCCATATAAAGAGGGTCAGATGGAAGCA 1425
Query 1440 TTGGAGAAGGACCGCGGAGCTGAACTTGAAGTTGTGCAAAGGCTGGAAGATAAAGTGCGT 1499
||||||||||| || | | | ||||||||| ||| ||| |||||| ||||||||||||
Sbjct 1426 TTGGAGAAGGATCGAGAATCAGAACTTGAAATTGGGCACAGGCTGAAAGATAAAGTGCAC 1485
Query 1500 G-GTTTATCAGCTCAATTAGCAAATGTTCAGTTTACATACCGCGATCCTGTGAGGAACTT 1558
| || || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1486 GAACTT-TCGGCTCAATTAGCAAATGTTCAGTTTACATACCGCGATCCTGTGAAAAACTT 1544
Query 1559 TGACCGATCTAAGGTGAAAGGTGTGGTCGCAAAACTGATAAAAGTAAAAGATAGGTCCTC 1618
||| ||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1545 TGATCGATCAAAGGTGAAAGGTGTGGTTGCAAAACTGATAAAAGTGAATGATAGGTCCTC 1604
Query 1619 AATGACAGCCTTGGAGGTTACTGCTGGTGGGAAGTTGTATAATGTTGTTGTAGACTCAGA 1678
||||||||| |||||||||||||||||||||||||| | ||||||| |||||||| ||||
Sbjct 1605 AATGACAGCTTTGGAGGTTACTGCTGGTGGGAAGTTATTTAATGTTATTGTAGACACAGA 1664
Query 1679 AGATACTGGAAAACAGCTCCTTCAAAACGGTGCTCTTAGGAGAAGAGTTACAATCATACC 1738
||||||||||||||||||||||||||| |||| |||| |||||||||||||||| || ||
Sbjct 1665 AGATACTGGAAAACAGCTCCTTCAAAAGGGTGATCTTCGGAGAAGAGTTACAATTATTCC 1724
Query 1739 TCTGAACAAAATCCAATCTTATGTTGTT-CAGCCTAGAGTGCAGCAAGTGACTGCTAGAT 1797
||| |||||||| || ||| | | ||| || ||||||||||||||| | | | |
Sbjct 1725 TCTTAACAAAATTCAGTCTCACCTAGTTCCA-CCTAGAGTGCAGCAA--G-C--C---AC 1775
Query 1798 TGGTTGGAAAGGATAATGCAGAACTGGCACTTTCCTTAGTCGGTTATAGTGATGAATTAA 1857
| |||||||||| |||||| ||| |||||||||| ||||| ||||||||||| |||||||
Sbjct 1776 T-GTTGGAAAGGGTAATGCGGAATTGGCACTTTCTTTAGTTGGTTATAGTGAAGAATTAA 1834
Query 1858 AGAATGCCATTGAGTATGTTTTTGGTTCCACTTTTGTTTGCAAAACTACTGATGCGGCTA 1917
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AGAATGCCATGGAATATGTTTTTGGTTCCACTTTTGTTTGCAAAACTACTGATGCGGCTA 1894
Query 1918 AGGAAGTAGCATTTAATCGGGATATTCGGACTCCAAGTGTCACACTTGAAGGTGATAT-T 1976
||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| | |
Sbjct 1895 AGGAAGTAGCATTTAATAGGGAAATTCGGACTCCTAGTGTTACACTTGAAGGTGATGTAT 1954
Query 1977 TTCCAGCCAAGTGGTCTTCTTACTGGTGGGAGTCGCAAAGGTGGAGGTGATCTCCTTAGG 2036
||| ||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 1955 TTC-AGCCAAGTGGTCTTCTTACTGGTGGAAGTCGCAAGGGTGGAGGTGATCTGCTAAGA 2013
Query 2037 CAACTTCATGACCTGGCAGAAGCTGAATCAAAATTACAAGGACACCAAAAAAGGTTGGAT 2096
||||||||||| ||||| || |||||| ||||||| | || ||| || ||||| ||| |
Sbjct 2014 CAACTTCATGATCTGGCCGAGGCTGAAACAAAATTTCGAGCACATCAGAAAAGTTTGTCT 2073
Query 2097 GACATTGAAGCACAGATCAAAGAGCTTCAGCCTCTTCAAAAGAAATTCACAGATGTTAAT 2156
|| ||||||||| | ||||| ||||||||||||||||||| ||| |||||||| | ||
Sbjct 2074 GAAATTGAAGCAAACATCAAGGAGCTTCAGCCTCTTCAAACGAAGTTCACAGACATGAAA 2133
Query 2157 GCACAGTTGGAGCTAAAAACGTACGACTTGTCCTTATTTTTGAAGAGGGCTGAACAGAAT 2216
|||||||||||||| |||| ||| ||| ||||||||||| | || ||||||||||||||
Sbjct 2134 GCACAGTTGGAGCTGAAAATGTATGACATGTCCTTATTTCTAAAAAGGGCTGAACAGAAC 2193
Query 2217 GAGCATCACAAGCTTGGCGAAGCAGTaaaaaaaCTTGAAGAAGAGCTTGAAGCAGCGAAA 2276
||||| ||||||||||| || ||||| || ||||||||||||||| |||||| | || |
Sbjct 2194 GAGCACCACAAGCTTGGTGACGCAGTGAAGAAACTTGAAGAAGAGGTTGAAGAAATGAGA 2253
Query 2277 TTCCAAATCAAAGAGAAGGAACTTGCTTATA-AAAA-TTGTGTTGATGCTGTTTCCAAAC 2334
| ||||||||||||||||||| | ||| || |||| ||||| |||| |||| |||| |
Sbjct 2254 TCCCAAATCAAAGAGAAGGAAGGT-CTT-TACAAAAGTTGTGCTGATACTGTCTCCACGC 2311
Query 2335 TAGAGAATTCCATCAAAGACCATGACAAAAACAGAGAAGGAAGACTCAAGGACTTGGaaa 2394
| ||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct 2312 TGGAGAAATCCATCAAAGATCATGATAAGAACAGAGAGGGAAGACTCAAGGACTTGGAAA 2371
Query 2395 aaaaTATTAAGAC-CATCAAAGCTCAAATGCAGGCAGCTTCCAAAGATTTAAAGAGTCAT 2453
| |||||||| || | | ||||||| || |||||| | || |||||| ||||| |||||
Sbjct 2372 AGAATATTAAAACTC-TAAAAGCTCGTATTCAGGCATCCTCAAAAGATCTAAAGGGTCAT 2430
Query 2454 GAAAATGAAAAAGAGAAGCTTGTGATGGAGAAAGACGCAATGGGGAAAGAACAGTCGTCC 2513
||||| | || |||| ||||||||||||| |||| ||| || | | |||||||| |
Sbjct 2431 GAAAACGTAAGGGAGAGGCTTGTGATGGAGCAAGAAGCAGTGACGCAGGAACAGTCATAT 2490
Query 2514 TTGGAGAGCCA-CTTAGCTTCATTG-GAAACCCAAATTAGCACTCTGACTTCGGAAGTAG 2571
|| ||||||| || | |||||||| | | | ||||||||||||||| |||| || || |
Sbjct 2491 TTAAAGAGCCAGCTAA-CTTCATTGAGGA-CGCAAATTAGCACTCTGGCTTCAGATGTGG 2548
Query 2572 ACGAGCAGCGAGCCAAGGTTGATGCCTTACAGAAG-ATTCATGATGAGTCTCT-TGCCGA 2629
| | || ||||||||||| |||||| |||||||| || |||||| ||||||| | | ||
Sbjct 2549 GCAATCAACGAGCCAAGGTGGATGCCATACAGAAGGAT-CATGATCAGTCTCTCT-CTGA 2606
Query 2630 GCTCAAGTTGATACATGCAAAGATGAAGGAATGTGATACACAGATAAGTGGTTTTGTCAC 2689
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |
Sbjct 2607 GCTCAAGTTGATACATGCAAAGATGAAGGAATGTGATACACAGATTAGTGGTTCTATTGC 2666
Query 2690 TGCCCAGGAAAAGTGTCTGCAGAAGCTTAGTGACATGAAACTTGAGAGAAAGAAATTGGA 2749
| ||||||||||||||||||||| ||||||||||||| ||||| |||||||| || ||
Sbjct 2667 AGAGCAGGAAAAGTGTCTGCAGAAGATTAGTGACATGAAGCTTGACAGAAAGAAGTTAGA 2726
Query 2750 AAATGAGGTCGT-AAGGATGGAGACGGATCACAAGGATTGTTCCGTGAAGGTAGACAAAC 2808
||||||||| | ||||||||||| ||| |||||| ||||||| ||||||||||||||||
Sbjct 2727 AAATGAGGT-GACAAGGATGGAGATGGAGCACAAGAATTGTTCAGTGAAGGTAGACAAAC 2785
Query 2809 TTGTTGAGAAGCATACATGGAT-AGCATCTGAAAAGCAACTTTTTGGAAAAGGAGGGACA 2867
|||||||||||||||||||||| | ||||||| |||| ||||||||||| |||||||||
Sbjct 2786 TTGTTGAGAAGCATACATGGATTA-CATCTGAGAAGCGGCTTTTTGGAAACGGAGGGACA 2844
Query 2868 GATTATGATTTTGAATTTTGTGATCCGT-ATGTAGCCAGACAAAAACTTGAAA-AGCTCC 2925
|| ||||||||||||| | ||||| | | ||| ||| || ||||||||| | ||||
Sbjct 2845 GACTATGATTTTGAATCCCGCGATCC-TCACAAAGCAAGAGAAGAACTTGAAAGA-CTCC 2902
Query 2926 AGTCAGATCAATCAGG-CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAG 2984
|| ||||||||||| | || | | |||||||||||||||||||| | |||||||||||||
Sbjct 2903 AGACAGATCAATCAAGTCTAG-AGAAAAGAGTGAACAAGAAGGTCACGGCTATGTTTGAG 2961
Query 2985 AAAGCAGAAGATGAATACAATGCTCTGAT-ATCGAAGAAAAATACTA-TCGAGAATGACA 3042
||||| ||||||||||| |||||||| || | | |||||||||| || |||||| |||||
Sbjct 2962 AAAGCTGAAGATGAATATAATGCTCTTATGACC-AAGAAAAATA-TAATCGAGACTGACA 3019
Query 3043 AATCAAAAATCACA-AAAGTGATTGAGGAGCTTGATGAGAAGAAAAAAGAAACCCTGAAA 3101
|||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 3020 AATCAAAAATCA-AGAAAGTTATTGAGGAGCTTGATGAGAAGAAAAAAGAAACACTGAAA 3078
Query 3102 GTCACGTGGGTTAAAGTTAACCAGGATTTCGGATCAATCTTTTCAACTCTACTACCTGGC 3161
|| || ||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 3079 GTTACATGGGTTAAAGTTAACCAGGATTTTGGTTCCATCTTTTCAACTCTACTACCTGGC 3138
Query 3162 ACCATGGCAAAACTAGAACCTCCTGAAGGCGGTAGCTT-CCTTGATGGTCTTGAGGTGCG 3220
|||||| ||||| |||||||||| || || |||| ||| |||||||||||||||||| ||
Sbjct 3139 ACCATGTCAAAATTAGAACCTCCAGAGGGAGGTA-CTTTCCTTGATGGTCTTGAGGTCCG 3197
Query 3221 TGTTGCCTTTGGAAAAGTCTGGAAGCAGTCTTTATCAGAACTCAGTGGAGGGCAAAGATC 3280
|||||| |||||| | |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 3198 TGTTGCTTTTGGAGATGTCTGGAAACAGTCTTTATCTGAACTAAGTGGAGGGCAAAGATC 3257
Query 3281 ACTTCTTGCGCTATCACTAATATTGGCATTGCTTCTCTTCAAACCGGCTCCTCTTTATAT 3340
|||||||| ||||| |||| |||| ||||| ||||| || || |||||| |||||||
Sbjct 3258 TCTTCTTGCACTATCTTTAATCCTGGCGTTGCTACTCTTTAAGCCAGCTCCTATTTATAT 3317
Query 3341 ATTAGACGAGGTTGATGCAGCTCTTGATCTCAGTCACACACAGAACATAGGAAGAATGAT 3400
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 3318 CTTAGATGAGGTTGATGCAGCTCTTGATCTAAGCCACACACAGAACATAGGAAGAATGAT 3377
Query 3401 AAAAGCTCATTTCCCTCACTCGCAGTTTATCGTGGTTTCGCTGAAAGAAGGAATGTTCAA 3460
|||| |||||||||| || || ||||| || |||||||| |||||||||||||||||||
Sbjct 3378 AAAATCTCATTTCCCACATTCACAGTTCATTGTGGTTTCACTGAAAGAAGGAATGTTCAG 3437
Query 3461 CAACGCCAATGTTCTTTTCCGGACAAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGAC 3520
||||||| ||||||| ||||| ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct 3438 CAACGCCGATGTTCTCTTCCGAACAAAATTCGTGGATGGTGTTTCAACGGTCCAGAGGAC 3497
Query 3521 AGTAACAAAGCAGA 3534
||||||||| ||||
Sbjct 3498 AGTAACAAAACAGA 3511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 182507338634
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5