BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496421
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62440.1 | Symbols: | Protein of unknown function (DUF3223)... 1050 0.0
> AT5G62440.1 | Symbols: | Protein of unknown function (DUF3223)
| chr5:25072468-25073991 REVERSE LENGTH=835
Length=835
Score = 1050 bits (568), Expect = 0.0
Identities = 654/695 (94%), Gaps = 7/695 (1%)
Strand=Plus/Plus
Query 27 AAGGCGAAAGCTTGACTGGTTTATCAATGGC-GGAGCAACAAGAGATCCTCGATTCCGTT 85
|||||| |||||| ||| | ||| ||||||| | || ||||||||||| |||||||| |
Sbjct 49 AAGGCGGAAGCTTTACTAGCTTAACAATGGCTGAAG-AACAAGAGATCGTCGATTCCCTG 107
Query 86 TCAGCTCAAGTGAACCCAGACCAGAAAGTTGACATGGAGGTCGAAGCCGTGGCCCCAAAA 145
||||| |||||||||||||||||||||| |||||||| |||||| ||| | |||| |||
Sbjct 108 TCAGCGGAAGTGAACCCAGACCAGAAAGTGGACATGGAAGTCGAAACCGCGACCCCGAAA 167
Query 146 GCCGAGACCGGCGATgagaaacgtgagagagaggagacagaggaagaagagaacggaggt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GCCGAGACCGGCGATGAGAAACGTGAGAGAGAGGAGACAGAGGAAGAAGAGAACGGAGGT 227
Query 206 gaatcgaagaagcagaaggt-ggcagaggaagagaagTCAGGTCCGGTTAAACTTGGTCC 264
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 228 GAATCGAAGAAGCAGAAGGTTGG-AGAGGAAGAGAAGTCAGGTCCGGTTAAACTTGGTCC 286
Query 265 GAAGGAGTTTGTTACCTCTGTGGCGATGTTCGATTACTTTGTCAAGTTTTTGCACTTTTG 324
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 287 CAAGGAGTTTGTTACCTCTGTGGCGATGTTCGATTACTTTGTCAAGTTTTTACACTTTTG 346
Query 325 GCCAACTGATCTCGATGTTAATAAGTATGAGCACATGGTGCTGCTAGATCTGATCAAGAA 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 347 GCCAACTGATCTCGATGTTAATAAGTATGAGCACATGGTGCTGCTAGATCTGATTAAGAA 406
Query 385 GGGCCACTCTGAGCCTGAAAAGAAGATTGGAGGAGGAATCAAAACCTTCCAAGTCAGAAC 444
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 407 GGGCCATTCTGAGCCTGAAAAGAAGATTGGAGGAGGAATCAAAACCTTCCAAGTAAGAAC 466
Query 445 CCACCCAATGTGGAAAAGCCGATGCTTCTTTCTGGTTAGGGAAGACGATACTGCAGACGA 504
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CCACCCAATGTGGAAAAGCAGATGCTTCTTTCTGGTTAGGGAAGACGATACTGCAGACGA 526
Query 505 TTTCAGCTTCAGGAAGTGTGTTGATCACATCCTTCCATTGCCTGAAAACATGAAGAGTCC 564
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 527 TTTCAGCTTCAGGAAGTGTGTTGATCAAATCCTCCCATTGCCTGAAAACATGAAGACTCC 586
Query 565 TGGAGCTAATGGCAATGGACAtggcggtggtggtcgtggtggcggtggtggaagaagagg 624
||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 587 TGGAGCTAACGGCAATGGACATGG---TGGAGGTCGCGGTGGCGGTGGTGGAAGAAGAGG 643
Query 625 tggccgtggtggtggtAGAGGCGGGAGATTCAGAAGATGAATTTGCTGACACTTGATACC 684
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 644 CGGTCGTGGTGGTGGTAGAGGAGGGAGATTCAGAAGATGAATATGCTGACACTTGATGCC 703
Query 685 TTATTTCAAAAGAAAATTTTGAAAATTTCAGATTT 719
|||||||||||||||||||||||||||||||||||
Sbjct 704 TTATTTCAAAAGAAAATTTTGAAAATTTCAGATTT 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5