BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496422
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62460.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1607 0.0
> AT5G62460.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25074883-25077294 FORWARD LENGTH=1345
Length=1345
Score = 1607 bits (870), Expect = 0.0
Identities = 1201/1348 (89%), Gaps = 73/1348 (5%)
Strand=Plus/Plus
Query 1 GAAATTTTGATTTACTTATCTGAGt-ttttttCTGACCGAACATCAAACAAGAAAACACA 59
||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||
Sbjct 1 GAAATTTTGATTTACTTATCTGAATATTTTTCCAGACCGAACATCAAACAAGAAAACACA 60
Query 60 TTTGTCCGAATTTCATC-TGAAAGCTGTGTGTCCCCTTCAAGAAATTGAAAGAGAGCTTC 118
||||||||||||||||| ||| |||||| ||| ||||||||||||| |||||||||||||
Sbjct 61 TTTGTCCGAATTTCATCTTGAGAGCTGTTTGTGCCCTTCAAGAAATCGAAAGAGAGCTTC 120
Query 119 TTT-TCCCATTTTCTGCGATTCA-GAATAATTCTTC-TATAGAGGTCAACGttttttttA 175
||| |||||||||||||||||| | ||| |||||| | || ||| ||||| ||||||||
Sbjct 121 TTTCCCCCATTTTCTGCGATTCACG-ATATTTCTTCTTCTATAGGACAACG-TTTTTTTA 178
Query 176 CGCATTGAGGCTAAAAGAGAGATGGCTGATGATCTGAGTACAAGTACTGACCGTCTCGTA 235
| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 179 CACATTGAGGCTAAAAGAGAGATGGCTGATGATCAGAGTTCAAGTACTGACCGTCTCGTG 238
Query 236 AAACCTGAAAGTTTAAATTCAGAGAGAGGATCCAATCAATCGATTGAATCTTCTGGAGAG 295
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 239 AAACCTGAAAGTTTAAACTCAGATAGAGGATCCAATCAATCTATTGAATCTTCTGGAGAG 298
Query 296 AGTTCTAAAGCTCAAGGTCCCAAAAGCCTG------------TCTATGGATGGT---AAA 340
||||||| |||||| ||| ||| ||||||| |||||||||||| |||
Sbjct 299 AGTTCTAGAGCTCAGGGTTCCACAAGCCTGTCTACTACTAAATCTATGGATGGTAAGAAA 358
Query 341 ACCGAGGACGATGAGGCAACAGAACAACGCGATGTTGCTGAGGAAGAGGAACCGCTTATC 400
|||||||| || ||| |||| |||||||||||||||| ||| |||||||||||||| |||
Sbjct 359 ACCGAGGAAGAAGAGACAACGGAACAACGCGATGTTGATGATGAAGAGGAACCGCTCATC 418
Query 401 CAATCGGTTGAATGTCGTATATGCCAAGAGGAGGATTCAGTTAAGAACCTCGAGTCCCCT 460
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 CAATCGGTTGAATGTCGTATATGCCAAGAGGAGGATTCCGTTAAGAACCTCGAGTCCCCT 478
Query 461 TGTTCTTGTAGTGGTAGTTTGAAGTATGCACATCGGAAGTGTGTTCAACGTTGGTGTAAT 520
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 479 TGTTCTTGTAGTGGCAGTTTGAAGTATGCTCATCGTAAGTGTGTTCAACGTTGGTGTAAT 538
Query 521 GAGAAAGGCGACACAACCTGTGAAATATGCCACAAGTCTTATCAACCTGGATACACCGct 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAGAAAGGCGACACAACCTGTGAAATATGCCACAAGTCTTATCAACCTGGATACACCGCT 598
Query 581 cctcctcctcctcctGCTGATGATACCATAATTGATATCGGTGAAGACTGGGCCAATGGT 640
|||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||
Sbjct 599 CCTCCTCCTCCTCCCGCTGATGATACCATTATTGATATCGGTGAAGATTGGGGCAATGGT 658
Query 641 GTTCCCTTAGATTTGAATGATCCACGCATTTTGGCAATGGCGGCTGCAGAACGCCATTTC 700
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTTCACTTAGATTTGAATGACCCACGCATTTTGGCAATGGCGGCTGCAGAACGCCATTTC 718
Query 701 TTTGATGCTGACTATGACGAATATGCGGATTCTAACTCGAGCGGAGCTGCATTTTGTCGC 760
|||||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 719 TTTGATGCGGACTATGACGAATACGCTGATTCTAACTCTAGCGGAGCTGCATTCTGTCGC 778
Query 761 TCCGCTGCTCTTATTTTAATGGCGCTTTTACTGTTACGGCACGCTCTGAACCTTACAAAC 820
|| ||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 779 TCTGCTGCTCTTATATTAATGGCGCTTTTACTCTTACGACACGCTCTAAATCTTACAAAC 838
Query 821 AACAACTCAGATGACGAAGAAGACGATCCATCAGCTTTCTTCTTTCTTTTCATGCTTCGT 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AACAACTCAGATGACGAAGAAGACGATCCATCAGCTTTCTTCTTTCTTTTCATGCTTCGA 898
Query 881 GCCGCGGGTTTTCTTCTCCCGTGTTACATCATGGCATGGGCTATTAGTATATTACAACGT 940
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 GCCGCTGGTTTTCTCCTCCCGTGTTACATCATGGCTTGGGCTATTAGTATATTACAACGT 958
Query 941 CGCAGACAAAGACAGGAAGCTGCTGCTCTGGCTGCTGCCGAAGTAGCGTTTATGTTACAT 1000
|| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 959 CGAAGACAAAGACAGGAAGCTGCTGCTCTAGCTGCGGCAGAAGTAGCGTTTATGTTACAT 1018
Query 1001 AGCGGCGGAGGCGGGGGTGGACAACGAAGAGGAGGTTTGCACTTTGCTGTTCCACCAGAG 1060
||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1019 AGCGGTGGGGGCGGGGGAGGACAACGCAGAGGAGGTTTGCACTTTGCTGTACCACCAGAG 1078
Query 1061 CTTGTATCTAATCCACACCACCAACCTGAAGCTTCA-C-C-GTAATGATA-A------T- 1109
||| |||||||||||||||||||||||||||||||| | | || || ||| | |
Sbjct 1079 CTTATATCTAATCCACACCACCAACCTGAAGCTTCACCGCAGTGATTATATATTCCCGTC 1138
Query 1110 A----TAAGAGAAATCAATCATCATCCGA-AACGTTTGTTtctctc--tctct--c-t-t 1158
| |||||||||||||||||||| | | ||||| ||||||||| ||||| | | |
Sbjct 1139 ACCGGTAAGAGAAATCAATCATCAT-CTACGACGTTGGTTTCTCTCTATCTCTCACTTCT 1197
Query 1159 -tctctGTGAAGTAGC-----------TTGTGT----GT-TTG-----T---CAAACACA 1193
|||||||| |||||| |||||| || ||| | ||||||||
Sbjct 1198 CTCTCTGTGTAGTAGCTTGTGTGTTTGTTGTGTACCGGTCTTGCTCTCTCACCAAACACA 1257
Query 1194 CAAAACTGAGATTATAAAACACGGCAAGTTTCTTTGTCTAT---CTTCTTACGGACGAGA 1250
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1258 CAAAACTGAGATTATAAAACACGGCAAGTTTCTTTGTCTATTATCTTCTTACAGACGAGA 1317
Query 1251 AAAGAAAGATTGTTCACCTATTGAATTT 1278
||||||||||| ||||||||||| ||||
Sbjct 1318 AAAGAAAGATTCTTCACCTATTGGATTT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5