BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496423
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62470.2 | Symbols: MYB96 | myb domain protein 96 | chr5:250... 1777 0.0
AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain p... 538 5e-152
AT1G08810.1 | Symbols: MYB60, AtMYB60 | myb domain protein 60 |... 291 1e-77
> AT5G62470.2 | Symbols: MYB96 | myb domain protein 96 | chr5:25078991-25081101
REVERSE LENGTH=1745
Length=1745
Score = 1777 bits (962), Expect = 0.0
Identities = 1176/1269 (93%), Gaps = 55/1269 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303
Query 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363
Query 121 CCAACTA-ACACAGGTTT--G-AGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTA 176
||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 364 CCAAC-ACACACAGGTTTGAGAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTA 422
Query 177 TCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACTATTGTTCA 236
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 423 TCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCA 482
Query 237 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 542
Query 297 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAGAAGGTTAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 543 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAA 602
Query 357 TGAATCTGGTGAAGAAGATAATGATGGTGTCTCCTCATCAAACACTAGCTCACAAAAGAA 416
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 603 TGAATCTGGTGAAGAAGATAATGATGGTGTCTCTTCATCAAACACTAGTTCACAAAAGAA 662
Query 417 CCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGATATTAACATGGC 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 CCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGACATTAACATGGC 722
Query 477 AAAACAAGCTCTTTGTGAGGCCTTGTCTTTAGACAAA-C--CAT-CA-----TCATCA-- 525
||||||||||||||||||||||||||||||||||||| | ||| || ||||||
Sbjct 723 AAAACAAGCTCTTTGTGAGGCCTTGTCTTTAGACAAACCATCATCCACTCTTTCATCATC 782
Query 526 -TCATCGTTGCCGACACCAGTAATCACGCAACAAAACATCCATAGCTTCTCATCAGCTTT 584
||||| || ||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 783 TTCATCATTACCGACACCAGTAATCACACAACAAAACATCCGTAACTTCTCATCAGCTTT 842
Query 585 GCTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCCTCTACAACCACAACTACGACTAC 644
|||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||
Sbjct 843 GCTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCATCT---ACCACAACCACCACTAC 899
Query 645 AAGCAATACTACCAATCCACACCCATCAGGTGTATATGCGTCAAGTGCTGAGAACATCGC 704
|||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 900 AAGCAACACTACTAATCCATACCCATCAGGGGTATATGCGTCAAGTGCTGAGAACATCGC 959
Query 705 TCGGTTGCTTCAAGATTTCATGAAAGACACACCAAAGGCTTTAACTTTATTATCTTCATC 764
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 960 CCGGTTGCTTCAAGATTTCATGAAAGACACACCCAAGGCTTTAACTTTATCATCTTCATC 1019
Query 765 TCCAGTTTCAGAGACCGGACCACTCGCTGCTGCAGTCTCGGAAGAAGGTGCAGAAGGGTT 824
||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1020 TCCGGTTTCAGAGACTGGACCACTCACTGCTGCAGTCTCGGAAGAAGGTGGAGAAGGGTT 1079
Query 825 TGAACAATCTTTCTTCAGCTTCAATTCAATGGAAGAAACTCAAAACTTGACTCAGGCGAC 884
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1080 TGAACAATCTTTCTTCAGCTTCAATTCAATGGACGAAACTCAAAACTTGACTCAGGAGAC 1139
Query 885 AAGCTTCTTCCATGATCAAGAGATCAAACCGGAAATAATAATGGACCAAGATCATGGTTT 944
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 1140 AAGCTTCTTCCATGATCAAGTGATCAAACCGGAAATAACAATGGACCAAGATCATGGTCT 1199
Query 945 AATATCACAAGGGTCTCTGTCTTTGTTGGAGAAATGGTTATTTGATGAGCAAAGCCACGA 1004
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 AATATCACAAGGGTCTCTGTCTTTGTTTGAGAAATGGTTATTTGATGAGCAAAGCCACGA 1259
Query 1005 GATGGTTGGTATGGTGGCACTAGAAGGACAAGAAGGGATGTTCTAGTTCT---AGA---- 1057
||||||||||| ||||||||| |||||||||||||||||||||||||| |||
Sbjct 1260 GATGGTTGGTA---TGGCACTAGCAGGACAAGAAGGGATGTTCTAGTTCTAGAAGACTGT 1316
Query 1058 --AG-----AC---------T-TTTTT-AAGTTGAGGGCTTAATTAGTTATGAGTTATAA 1099
|| || | ||||| || |||||||||||||||||||||||||||||
Sbjct 1317 CTAGAACTAACAAAGTGGGATCTTTTTAAAATTGAGGGCTTAATTAGTTATGAGTTATAA 1376
Query 1100 CAAATAATATAGAGTTATAACCTAT-AT------GCTTATTATTGCATTAGGGTTTTAGA 1152
||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 1377 CAAATAATATAGAGTTATAACCTATGATATATATGCTTATTATTGCTTTAGGGTTTTAGA 1436
Query 1153 GTCTTTAGTAGCTAGCTTTTAGCTCTACAACACTCTTTTTCCCTTTTGGTGATATAAATA 1212
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1437 GTCTTTAGTAGCTAGCTTTTAGCTCTACAACACTCTTTTCCCCTTTTGGTGATATAAATC 1496
Query 1213 TCTCTCTTT 1221
||||| |||
Sbjct 1497 TCTCTTTTT 1505
> AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain
protein 94 | chr3:17539338-17541230 REVERSE LENGTH=1486
Length=1486
Score = 538 bits (291), Expect = 5e-152
Identities = 465/544 (85%), Gaps = 32/544 (6%)
Strand=Plus/Plus
Query 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 196 ATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 255
Query 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GAAGATATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTG 315
Query 121 CCAACTAACACAGGTTTGAG-A--TGTAGCAAGAGCTGCAGATTGAGATGGACTAATTAT 177
|| ||| ||||||||||||| | |||||||| ||||| |||||||| ||||||||||||
Sbjct 316 CCTACTCACACAGGTTTGAGGAGATGTAGCAAAAGCTGTAGATTGAGGTGGACTAATTAT 375
Query 178 CTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACT-ATTGTTCA 236
|||||||| || || |||||||||||||| || |||||||||||||||| | ||| | ||
Sbjct 376 CTTCGACCTGGGATCAAGCGTGGAAATTTCACCGAGCATGAAGAGAAGA-TGATTCTCCA 434
Query 237 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 296
||||||||| ||||| || ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 435 TCTTCAAGCTCTTTTGGGAAACAGGTGGGCAGCTATAGCATCATATCTTCCAGAAAGGAC 494
Query 297 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAGAAGGTTAA 356
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||
Sbjct 495 AGACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAAAAGCTCAAGAAGATGAA 554
Query 357 TGAATCTGGTGA-AGAAG-AT-AATGATGGTGTCTCCTCATCAA-ACA-CT--AGCTCA- 408
||| ||| |||| || | || || |||| | | | || || || || | |||
Sbjct 555 TGATTCTTGTGATAGTACTATCAACAATGGCCT-TGATAATAAAGACTTCTCCATATCAA 613
Query 409 -CAAAAG-A--ACC--A--TCAAAGCA-CTAAC---A--AA-GGTCAATGGGAAAGAAGA 453
||||| | ||| | |||||||| | ||| | || ||||||||||| |||||
Sbjct 614 ACAAAAACACTACCTCACATCAAAGCAGC-AACTCCAGTAAAGGTCAATGGGAGAGAAGG 672
Query 454 CTTCAGACAGATATTAACATGGCAAAACAAGCTCTTTGTGAGGCCTTGTCT-TTAGACAA 512
|||||||||||||| |||||||| ||||||||||||||||| ||||||||| || |||||
Sbjct 673 CTTCAGACAGATATCAACATGGCTAAACAAGCTCTTTGTGATGCCTTGTCTATT-GACAA 731
Query 513 ACCA 516
||||
Sbjct 732 ACCA 735
> AT1G08810.1 | Symbols: MYB60, AtMYB60 | myb domain protein 60
| chr1:2819065-2820395 REVERSE LENGTH=1123
Length=1123
Score = 291 bits (157), Expect = 1e-77
Identities = 296/361 (82%), Gaps = 17/361 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAGACCACCTTGCTGTGAAAAGAT-TGGAGTGAAGAAAGGACCATGGACACCAGA 59
||||| || || || |||||||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 67 ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCTGA 125
Query 60 GGAAGACATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 118
||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 126 AGAAGATATCATTCTT-GTTTCTTACATTCAAGAACATGGTCCTGGAAACTGGAGATCAG 184
Query 119 T-CCCAACTAACACAGG-TT-T-GAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAAT 174
| |||| | ||||| || || | |||||| ||||| || || ||| |||||||||| |||
Sbjct 185 TTCCCACC-AACACTGGGTTATTGAGATGCAGCAAAAGTTGTAGACTGAGATGGACAAAT 243
Query 175 TATCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACT-ATTGT 233
||||| |||| || ||||| |||||||| |||||| |||||||| | || | || |
Sbjct 244 TATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGA-AGGAATGATCAT 302
Query 234 TCATCTT-CAAGCCCTT-TTAGGCAACAGATGGGCAG-CCATAGCATCATACCTTCCAGA 290
||| ||| |||||| || || || |||| |||||| | ||||||| |||||||| ||| |
Sbjct 303 TCA-CTTGCAAGCC-TTATTGGGTAACAAATGGGC-GTCCATAGCTTCATACCTACCACA 359
Query 291 AAGGACAGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAGAA 350
||| || ||||||||||| |||||||| |||||||| || || |||||||||||||| ||
Sbjct 360 AAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTAAAGAAGAAGCTCAACAA 419
Query 351 G 351
|
Sbjct 420 G 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5