BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496427
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62490.1 | Symbols: ATHVA22B, HVA22B | HVA22 homologue B | c... 946 0.0
> AT5G62490.1 | Symbols: ATHVA22B, HVA22B | HVA22 homologue B |
chr5:25090130-25091559 FORWARD LENGTH=794
Length=794
Score = 946 bits (512), Expect = 0.0
Identities = 634/690 (92%), Gaps = 20/690 (3%)
Strand=Plus/Plus
Query 32 aaaaaaaaCAATTCAACTGCAAAAATGAGTTCCGGTATCGGAAGTTTAGTGAAGGTCATC 91
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 53 AAAAAAAACAATTCAACTGCAAAAATGAGTTCCGGAATCGGAAGTTTAGTGAAGGTCATC 112
Query 92 TTTAAGAACTTCGATGTCATCGCTGGACCTGTGATTAGCTTGGTTTATCCTCTATATGCA 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 TTTAAGAACTTCGATGTCATCGCTGGACCTGTGATTAGCTTGGTTTATCCTCTATATGCA 172
Query 152 TCAGTGAGGGCAATAGAGTCGAGGAGTCATGGAGACGACAAACAATGGTTGACGTATTGG 211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 173 TCAGTGAGGGCAATAGAGTCGAGGAGTCATGGAGACGACAAGCAATGGTTGACGTATTGG 232
Query 212 GCTCTCTACTCACTTATCAAACTCTTTGAGCTCACTTTCTACGGACTCATTGAATGGATC 271
|||||||| ||||||||||||||||||||||||||||| | | ||||| | |||||||||
Sbjct 233 GCTCTCTATTCACTTATCAAACTCTTTGAGCTCACTTTTTTCAGACTCCTCGAATGGATC 292
Query 272 CCATTATATCCATACGCCAAGCTAGCCCTAACTAGTTGGTTGGTCTTACCGGGCATGAGC 331
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 293 CCATTATATCCATACGCAAAGCTAGCCCTAACTAGTTGGTTGGTCTTACCGGGCATGAAC 352
Query 332 GGCGCTGCTTATCTCTACGAGCACTATGTGCGTTCATTCCTTTTAAGCCCACATACTGTT 391
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GGTGCTGCTTATCTCTACGAGCACTATGTGCGTTCATTCCTTTTAAGCCCACATACTGTT 412
Query 392 AACGTATGGTACGTGCCAGCCAAGAAGGATGACGATTTAGGAGCAGCCGCTGGCAAATTT 451
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 413 AACGTATGGTACGTGCCAGCCAAGAAGGATGACGACTTGGGAGCAACCGCTGGCAAATTT 472
Query 452 ACTCCGGTAAATGATTCCGGTGCGCCTCAGGAAAAGATTGTGAGCTCGGTGGATACATCA 511
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACTCCAGTAAATGATTCCGGTGCGCCTCAGGAAAAGATTGTGAGCTCGGTGGATACATCA 532
Query 512 GCCAAATATGTTGGTCACTCTGCTTTCGATGACACCTATAGCTACTAG--TAA-A-CTAC 567
|| |||||||||||||| || ||||| |||||| |||||| ||||||| || | |||
Sbjct 533 GCAAAATATGTTGGTCATTCGGCTTTTGATGACGCCTATATCTACTAGGCTAGTAGCTAG 592
Query 568 TA--C-A-T---G-CTGGTTGTAGCTGAATATCGTTTACCGATCTTAGTGTATCGTA-TA 618
|| | | | | || ||||||||||| ||| | ||||||||||||||| | ||
Sbjct 593 TAAACTACTTCCGGCTAGTTGTAGCTGAGCATCCT-----GATCTTAGTGTATCGAAATA 647
Query 619 CTTGtttttttctttttctttttttgttttcgggttttATGAAGTTTGTTGTCACTGCTA 678
|||||||| | || ||| || ||| ||||||||||||||||||||||||||| |||||||
Sbjct 648 CTTGTTTTCTCCTCTTT-TTCTTT-GTTTTCGGGTTTTATGAAGTTTGTTGTTACTGCTA 705
Query 679 AGAAATTTCAATATCAAAATAAAAGTTAAT 708
|| ||||| |||||||||||||| ||||||
Sbjct 706 AGGAATTTTAATATCAAAATAAATGTTAAT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5