BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496428
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protei... 1670 0.0
AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end ... 752 0.0
> AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protein
1B | chr5:25092641-25095244 FORWARD LENGTH=1408
Length=1408
Score = 1670 bits (904), Expect = 0.0
Identities = 1023/1078 (95%), Gaps = 18/1078 (2%)
Strand=Plus/Plus
Query 224 aaaaaTGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAACGAGAT 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 285 AAAAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAATGAGAT 344
Query 284 TCTCAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 343
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TCTGAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 404
Query 344 GGGTGCTGTGCAATGTCAAATGTTGGACATGACCTTTCCAGGAGTTGTGCCAATGCACAA 403
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 405 AGGTGCTGTGCAATGTCAAATGTTGGACATGACTTTTCCAGGAGTTGTGCCAATGCACAA 464
Query 404 GGTTAACTTTGATGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTTATGCAAGA 463
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 465 GGTTAACTTTGAAGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTCATGCAAGA 524
Query 464 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 584
Query 524 ACCACTAGACAATTTGGAGTTTCTACAATGGCTGAAACGATTTTGCGATTCCATAAATGG 583
|||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||
Sbjct 585 ACCACTAGACAATTTGGAGTTTCTTCAATGGTTGAAACGTTTTTGCGATTCAATAAATGG 644
Query 584 TGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGCAGAGAGAA 643
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 645 CGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGGAGAGAGAA 704
Query 644 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 764
Query 704 TCCAGTCACTACTTCCAACAAACCACCTGGTCCCAAGCAAGCAAAATCACATGCAATTGG 763
||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 765 TCCTGTGGCTACTTCCAACAAACCAGCTGGTCCCAAGCAAGCAAAATCACATGGAATTGG 824
Query 764 AGGTGGAAGCAACACATCAGCCGAAGTGCAAGCTCTGTCAAAAGAGGTAGCAGATCTCAA 823
|||||| |||||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 825 AGGTGGGAGCAACTCATCAGCCGAAGTGCAAGCTCTGTCAAAGGAGGTAGAAGATCTCAA 884
Query 824 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 944
Query 884 AGAGATACTATGTCAGACTCCTGAACTTGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 943
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 945 AGAGATACTATGTCAGACTCCTGAACTCGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 1004
Query 944 GATATTATACGCAACCGATGCAGATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1003
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1005 GATATTATACGCAACCGATGCAAATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1064
Query 1004 CCAGTCTCTAGGGCTTGAGG-TTGATgaagaagaaggaaaaga--ag-a-g--gaagaag 1056
|||||||||||||||||||| || ||||||||||||||||||| || | | |||||||
Sbjct 1065 CCAGTCTCTAGGGCTTGAGGGTT-ATGAAGAAGAAGGAAAAGAGGAGGAAGAAGAAGAAG 1123
Query 1057 aagaagaagaagaag---CAGCAGC------AGAGACCCAAACTTAAAGTTGTGACAAAT 1107
||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1124 AAGAAGAAGAAGAAGAAGCAGCAGCTGCTGCAGAGACCCAAACTTAAAGTTGTGACAAAT 1183
Query 1108 AAAAGTAGAGGACAACGATGGTTCATTGCCTTGTATTAGAAGATAGA-TCACTTGGAGAG 1166
||||||||||| |||| ||| | ||||||||||| |||||||||||| ||||||||||||
Sbjct 1184 AAAAGTAGAGGGCAACAATGATCCATTGCCTTGTCTTAGAAGATAGAATCACTTGGAGAG 1243
Query 1167 GGTGTTTGCACAATATTCAATTTACCCTAACCGGCTTTTTGGTTTTAAAGTGAACTGAAC 1226
| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1244 GATGTTTGCACAATATTCAATTTACCCTAACCGGTTTTTTGGTTTTACAGTGAACTGAAC 1303
Query 1227 CGAATTTGCTCCTTCCTAAATTTGAAAGATTATATGATGGGTTTTCACTGTATCACAA 1284
||||||| ||||||||||| |||||||||||| |||||| |||||| ||||||||||
Sbjct 1304 CGAATTTATTCCTTCCTAAACTTGAAAGATTATCTGATGGATTTTCATTGTATCACAA 1361
Score = 246 bits (133), Expect = 3e-64
Identities = 200/229 (87%), Gaps = 17/229 (7%)
Strand=Plus/Plus
Query 1 TCTCTAACCTTCGATTCTCCGTCCTTTTCTCTGCTCTTCAGTTTTCTCTTCCTAACAAGC 60
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 38 TCTCTAACCTTTGCTTCTCCGTCCTTTTCTCTG--CTTCAGTTTTCTCTTCCTAACAAGC 95
Query 61 AAAACCCCCAAAACAGATCGAATCCAtttttttCCTTAAAGAAACTTAAA-AAGAAAATT 119
||||||| ||| ||||||||| |||||||||||||| | |||| ||||| || |||| |
Sbjct 96 AAAACCCG-AAA-CAGATCGAA-CCATTTTTTTCCTTTA-GAAA-TTAAACAACAAAAAT 150
Query 120 CCtttttttttttttttttC--TTTCACCTAACCAAATTGATTCTCTTACCTTTT-AT-- 174
| ||||||| ||| |||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 151 CATTTTTTTGTTTGTTTT-CGGTTTCACCTAACCAAATTGATTCTCTTACCTTTTTATAT 209
Query 175 CACATTGCTGCATCTGGGTTTTCAATAGAAACAACAACAAACaaaaaaa 223
|||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct 210 CACATTGC---ATCTGGGTTTCCATTAGAAACAACAACAAACGAAAAAA 255
> AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end
binding protein EB1A | chr3:17581096-17583586 FORWARD LENGTH=1328
Length=1328
Score = 752 bits (407), Expect = 0.0
Identities = 709/851 (83%), Gaps = 36/851 (4%)
Strand=Plus/Plus
Query 226 aaaTGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAACGAGATTC 285
|||||||||||||||| || |||||||||||||| ||||| || ||||| ||||||||||
Sbjct 256 AAATGGCGACGAACATCGGAATGATGGATAGTGCATACTTCGTCGGAAGAAACGAGATTC 315
Query 286 TCAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATCGG 345
| | |||||| ||||| || ||||| |||||||||||||| |||||||||||||||| |
Sbjct 316 TGACTTGGATTAATGATCGTCTTCACCTCAATCTCTCTCGCGTCGAAGAGGCTGCATCTG 375
Query 346 GTGCTGTGCAATGTCAAATG-TTGGACATGACCTTTCCAGGAGTTGTGCCAATGCACAAG 404
|||||||||||||||| ||| || || ||||| |||||||||||||||||||||||||||
Sbjct 376 GTGCTGTGCAATGTCAGATGCTT-GATATGACATTTCCAGGAGTTGTGCCAATGCACAAG 434
Query 405 GTTAACTTTGATGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGT-TATGCAAGA 463
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 435 GTTAACTTTGATGCAAAGAACGAGTACGATATGATACAAAACTACAAGGTCT-TGCAAGA 493
Query 464 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 523
|| |||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 494 TGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGGCTTGTCAAAGGCCG 553
Query 524 ACCACTAGACAATTTGGAGTTTCTACAATGGCTGAAACGATTT-TGCGATTCCATAAATG 582
||||| || || ||||||||||| |||||||||||||| ||| || |||||||| ||||
Sbjct 554 GCCACTGGATAACTTGGAGTTTCTGCAATGGCTGAAACG-TTTCTGTGATTCCATTAATG 612
Query 583 GTGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGCAGAGAGA 642
||||||||||||| ||||| ||||||||||| || |||||||||||| ||| | |||||
Sbjct 613 GTGGCATTATGAATGAGAACTATAATCCAGTGGAGCGAAGATCAAGAAATGGTAAAGAGA 672
Query 643 AAAGCGTAAAGGGATCTAGTAAGATCTC-AAAGTCATTGCAAACAAACAATATGCATCAT 701
|| || |||||||||| |||||| || ||||||| ||||||||||||||| | |||
Sbjct 673 GGAGTGTGAAGGGATCTAATAAGAT-TCCAAAGTCACTGCAAACAAACAATAA-C--CAT 728
Query 702 CCTCCAGTCACTACTTCCAACAAACCACCTGGTCCCAAGCAA-GCAAAATCACATGCA-A 759
|||||| || | ||||| | | ||||| | |||| ||| ||| || |
Sbjct 729 CCTCCACCCA--A-TTCCAGTT--C-AGTTGGTCTTA-GCAAAGCA---TCAGG-GCCCA 777
Query 760 TTGGAGGTGGAAGCAACACATCAGCCGAAGTGCAAGCTCTGTCAAAAGAGGTAGCAGATC 819
|| | | |||| | | |||| |||||||| ||| |||| || ||| | | ||||
Sbjct 778 ----AG-TC-A-GCAA-A-AGCAGCTGAAGTGCAGGCTTTGTCGAAGGAGCTCGTGGATC 828
Query 820 TCAAGGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGG 879
||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 829 TCAAGATCTCTACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGG 888
Query 880 ATATAGAGATACTATGTCAGACTCCTGAACTTGATGATCTTCCGATAGTGGTAGCGGTTA 939
|| |||||||||| || || |||||||| || ||||||||||||||||||||||| || |
Sbjct 889 ATGTAGAGATACTCTGCCAAACTCCTGAGCTAGATGATCTTCCGATAGTGGTAGCAGTGA 948
Query 940 AGAAGATATTATACGCAACCGATGCAGATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCC 999
|||||||| | || |||||||||||| ||||||||| ||||||| |||||||||| ||
Sbjct 949 AGAAGATACTGTATGCAACCGATGCAAATGAATCTGCATTAGAAGACGCTCAAGAGTACC 1008
Query 1000 TAAACCAGTCTCTAGG-GCTTGAGGTTGATgaagaagaaggaaaagaagaggaagaagaa 1058
|||||||||| ||||| | |||| | |||||||| |||||||| | ||| || |||
Sbjct 1009 TAAACCAGTCCCTAGGAG-TTGAAGATGATGAAGCTGAAGGAAACGGAGAACAACTGGAA 1067
Query 1059 gaagaagaaga 1069
|||||| ||||
Sbjct 1068 GAAGAA-AAGA 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5