BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496428 Length=1284 Score E Sequences producing significant alignments: (Bits) Value AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protei... 1670 0.0 AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end ... 752 0.0 > AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protein 1B | chr5:25092641-25095244 FORWARD LENGTH=1408 Length=1408 Score = 1670 bits (904), Expect = 0.0 Identities = 1023/1078 (95%), Gaps = 18/1078 (2%) Strand=Plus/Plus Query 224 aaaaaTGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAACGAGAT 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 285 AAAAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAATGAGAT 344 Query 284 TCTCAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 343 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 TCTGAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATC 404 Query 344 GGGTGCTGTGCAATGTCAAATGTTGGACATGACCTTTCCAGGAGTTGTGCCAATGCACAA 403 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 405 AGGTGCTGTGCAATGTCAAATGTTGGACATGACTTTTCCAGGAGTTGTGCCAATGCACAA 464 Query 404 GGTTAACTTTGATGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTTATGCAAGA 463 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 465 GGTTAACTTTGAAGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTCATGCAAGA 524 Query 464 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 584 Query 524 ACCACTAGACAATTTGGAGTTTCTACAATGGCTGAAACGATTTTGCGATTCCATAAATGG 583 |||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||| Sbjct 585 ACCACTAGACAATTTGGAGTTTCTTCAATGGTTGAAACGTTTTTGCGATTCAATAAATGG 644 Query 584 TGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGCAGAGAGAA 643 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 645 CGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGGAGAGAGAA 704 Query 644 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 AAGCGTAAAGGGATCTAGTAAGATCTCAAAGTCATTGCAAACAAACAATATGCATCATCC 764 Query 704 TCCAGTCACTACTTCCAACAAACCACCTGGTCCCAAGCAAGCAAAATCACATGCAATTGG 763 ||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 765 TCCTGTGGCTACTTCCAACAAACCAGCTGGTCCCAAGCAAGCAAAATCACATGGAATTGG 824 Query 764 AGGTGGAAGCAACACATCAGCCGAAGTGCAAGCTCTGTCAAAAGAGGTAGCAGATCTCAA 823 |||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 825 AGGTGGGAGCAACTCATCAGCCGAAGTGCAAGCTCTGTCAAAGGAGGTAGAAGATCTCAA 884 Query 824 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 GGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGGATAT 944 Query 884 AGAGATACTATGTCAGACTCCTGAACTTGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 943 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 945 AGAGATACTATGTCAGACTCCTGAACTCGATGATCTTCCGATAGTGGTAGCGGTTAAGAA 1004 Query 944 GATATTATACGCAACCGATGCAGATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1003 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1005 GATATTATACGCAACCGATGCAAATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCCTAAA 1064 Query 1004 CCAGTCTCTAGGGCTTGAGG-TTGATgaagaagaaggaaaaga--ag-a-g--gaagaag 1056 |||||||||||||||||||| || ||||||||||||||||||| || | | ||||||| Sbjct 1065 CCAGTCTCTAGGGCTTGAGGGTT-ATGAAGAAGAAGGAAAAGAGGAGGAAGAAGAAGAAG 1123 Query 1057 aagaagaagaagaag---CAGCAGC------AGAGACCCAAACTTAAAGTTGTGACAAAT 1107 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1124 AAGAAGAAGAAGAAGAAGCAGCAGCTGCTGCAGAGACCCAAACTTAAAGTTGTGACAAAT 1183 Query 1108 AAAAGTAGAGGACAACGATGGTTCATTGCCTTGTATTAGAAGATAGA-TCACTTGGAGAG 1166 ||||||||||| |||| ||| | ||||||||||| |||||||||||| |||||||||||| Sbjct 1184 AAAAGTAGAGGGCAACAATGATCCATTGCCTTGTCTTAGAAGATAGAATCACTTGGAGAG 1243 Query 1167 GGTGTTTGCACAATATTCAATTTACCCTAACCGGCTTTTTGGTTTTAAAGTGAACTGAAC 1226 | |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1244 GATGTTTGCACAATATTCAATTTACCCTAACCGGTTTTTTGGTTTTACAGTGAACTGAAC 1303 Query 1227 CGAATTTGCTCCTTCCTAAATTTGAAAGATTATATGATGGGTTTTCACTGTATCACAA 1284 ||||||| ||||||||||| |||||||||||| |||||| |||||| |||||||||| Sbjct 1304 CGAATTTATTCCTTCCTAAACTTGAAAGATTATCTGATGGATTTTCATTGTATCACAA 1361 Score = 246 bits (133), Expect = 3e-64 Identities = 200/229 (87%), Gaps = 17/229 (7%) Strand=Plus/Plus Query 1 TCTCTAACCTTCGATTCTCCGTCCTTTTCTCTGCTCTTCAGTTTTCTCTTCCTAACAAGC 60 ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 38 TCTCTAACCTTTGCTTCTCCGTCCTTTTCTCTG--CTTCAGTTTTCTCTTCCTAACAAGC 95 Query 61 AAAACCCCCAAAACAGATCGAATCCAtttttttCCTTAAAGAAACTTAAA-AAGAAAATT 119 ||||||| ||| ||||||||| |||||||||||||| | |||| ||||| || |||| | Sbjct 96 AAAACCCG-AAA-CAGATCGAA-CCATTTTTTTCCTTTA-GAAA-TTAAACAACAAAAAT 150 Query 120 CCtttttttttttttttttC--TTTCACCTAACCAAATTGATTCTCTTACCTTTT-AT-- 174 | ||||||| ||| |||| | ||||||||||||||||||||||||||||||||| || Sbjct 151 CATTTTTTTGTTTGTTTT-CGGTTTCACCTAACCAAATTGATTCTCTTACCTTTTTATAT 209 Query 175 CACATTGCTGCATCTGGGTTTTCAATAGAAACAACAACAAACaaaaaaa 223 |||||||| |||||||||| || ||||||||||||||||| |||||| Sbjct 210 CACATTGC---ATCTGGGTTTCCATTAGAAACAACAACAAACGAAAAAA 255 > AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end binding protein EB1A | chr3:17581096-17583586 FORWARD LENGTH=1328 Length=1328 Score = 752 bits (407), Expect = 0.0 Identities = 709/851 (83%), Gaps = 36/851 (4%) Strand=Plus/Plus Query 226 aaaTGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAACGAGATTC 285 |||||||||||||||| || |||||||||||||| ||||| || ||||| |||||||||| Sbjct 256 AAATGGCGACGAACATCGGAATGATGGATAGTGCATACTTCGTCGGAAGAAACGAGATTC 315 Query 286 TCAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATCGG 345 | | |||||| ||||| || ||||| |||||||||||||| |||||||||||||||| | Sbjct 316 TGACTTGGATTAATGATCGTCTTCACCTCAATCTCTCTCGCGTCGAAGAGGCTGCATCTG 375 Query 346 GTGCTGTGCAATGTCAAATG-TTGGACATGACCTTTCCAGGAGTTGTGCCAATGCACAAG 404 |||||||||||||||| ||| || || ||||| ||||||||||||||||||||||||||| Sbjct 376 GTGCTGTGCAATGTCAGATGCTT-GATATGACATTTCCAGGAGTTGTGCCAATGCACAAG 434 Query 405 GTTAACTTTGATGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGT-TATGCAAGA 463 ||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| Sbjct 435 GTTAACTTTGATGCAAAGAACGAGTACGATATGATACAAAACTACAAGGTCT-TGCAAGA 493 Query 464 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 523 || |||| ||| ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 494 TGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGGCTTGTCAAAGGCCG 553 Query 524 ACCACTAGACAATTTGGAGTTTCTACAATGGCTGAAACGATTT-TGCGATTCCATAAATG 582 ||||| || || ||||||||||| |||||||||||||| ||| || |||||||| |||| Sbjct 554 GCCACTGGATAACTTGGAGTTTCTGCAATGGCTGAAACG-TTTCTGTGATTCCATTAATG 612 Query 583 GTGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGCAGAGAGA 642 ||||||||||||| ||||| ||||||||||| || |||||||||||| ||| | ||||| Sbjct 613 GTGGCATTATGAATGAGAACTATAATCCAGTGGAGCGAAGATCAAGAAATGGTAAAGAGA 672 Query 643 AAAGCGTAAAGGGATCTAGTAAGATCTC-AAAGTCATTGCAAACAAACAATATGCATCAT 701 || || |||||||||| |||||| || ||||||| ||||||||||||||| | ||| Sbjct 673 GGAGTGTGAAGGGATCTAATAAGAT-TCCAAAGTCACTGCAAACAAACAATAA-C--CAT 728 Query 702 CCTCCAGTCACTACTTCCAACAAACCACCTGGTCCCAAGCAA-GCAAAATCACATGCA-A 759 |||||| || | ||||| | | ||||| | |||| ||| ||| || | Sbjct 729 CCTCCACCCA--A-TTCCAGTT--C-AGTTGGTCTTA-GCAAAGCA---TCAGG-GCCCA 777 Query 760 TTGGAGGTGGAAGCAACACATCAGCCGAAGTGCAAGCTCTGTCAAAAGAGGTAGCAGATC 819 || | | |||| | | |||| |||||||| ||| |||| || ||| | | |||| Sbjct 778 ----AG-TC-A-GCAA-A-AGCAGCTGAAGTGCAGGCTTTGTCGAAGGAGCTCGTGGATC 828 Query 820 TCAAGGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGG 879 ||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 829 TCAAGATCTCTACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGG 888 Query 880 ATATAGAGATACTATGTCAGACTCCTGAACTTGATGATCTTCCGATAGTGGTAGCGGTTA 939 || |||||||||| || || |||||||| || ||||||||||||||||||||||| || | Sbjct 889 ATGTAGAGATACTCTGCCAAACTCCTGAGCTAGATGATCTTCCGATAGTGGTAGCAGTGA 948 Query 940 AGAAGATATTATACGCAACCGATGCAGATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCC 999 |||||||| | || |||||||||||| ||||||||| ||||||| |||||||||| || Sbjct 949 AGAAGATACTGTATGCAACCGATGCAAATGAATCTGCATTAGAAGACGCTCAAGAGTACC 1008 Query 1000 TAAACCAGTCTCTAGG-GCTTGAGGTTGATgaagaagaaggaaaagaagaggaagaagaa 1058 |||||||||| ||||| | |||| | |||||||| |||||||| | ||| || ||| Sbjct 1009 TAAACCAGTCCCTAGGAG-TTGAAGATGATGAAGCTGAAGGAAACGGAGAACAACTGGAA 1067 Query 1059 gaagaagaaga 1069 |||||| |||| Sbjct 1068 GAAGAA-AAGA 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63152285610 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5