BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496432
Length=2514
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62530.1 | Symbols: ALDH12A1, ATP5CDH, P5CDH | aldehyde dehy... 3265 0.0
AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 | chr5:25097... 580 2e-164
> AT5G62530.1 | Symbols: ALDH12A1, ATP5CDH, P5CDH | aldehyde dehydrogenase
12A1 | chr5:25099003-25103298 REVERSE LENGTH=2575
Length=2575
Score = 3265 bits (1768), Expect = 0.0
Identities = 1980/2079 (95%), Gaps = 28/2079 (1%)
Strand=Plus/Plus
Query 1 GGGG-AAAACATTAAATTCTTTAATAAAGCTAATAAACACAAATCACTC-----TT---T 51
|||| |||||||| ||||||||||| ||||| |||||||||||||||| || |
Sbjct 1 GGGGAAAAACATTTAATTCTTTAAT-AAGCTGCTAAACACAAATCACTCGAGAATTCGCT 59
Query 52 A---T-T-ACCAATCTTCTTGAATCCTCTCCTCCAATCGTCTGATTCTCATCTTGCTCCG 106
| | | |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 60 ATTTTATCACCAATCTTCTTGAATCCTCTCATCCAATCGTCTGATTCTCATCTTTCTCCG 119
Query 107 TTTCTTCTGGATTTTACGCAATGTATAGAGTTTTTGCGAGCCGAGCACTGAGAGCTAAGT 166
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTACTTGTGGATCTTACGCAATGTATAGAGTTTTTGCGAGCCGAGCACTGAGAGCTAAGT 179
Query 167 CTCTCTGTGAAAAATCATCGACCTCGCTTGCTTCTTTGACTCTCTCTAGATTGAATCATT 226
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 180 CTCTCTGTGACAAATCATCCACCTCGCTTGCTTCTTTGACTCTCTCCAGATTGAATCATT 239
Query 227 CAATACCTTTTGCTACCGTAGATGCCGAGGAGCTATCTGGTGCTCATCCTGCTGAAGTAC 286
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 CCATACCTTTTGCTACCGTAGATGCCGAGGAGCTCTCTGGTGCTCATCCTGCTGAAGTAC 299
Query 287 AGAGCTTTGTGCAGGGAAAGTGGATAGGATCTTCAAATCATAATACGCTTCTAGATCCTC 346
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 300 AGAGCTTTGTGCAGGGAAAGTGGATAGGATCGTCAAATCATAACACGCTTCTAGATCCTC 359
Query 347 TAAATGGAGAACC-TTTCATTAAAGTTGCTGAAGTGGATGAATCAGGAACTCAGCCATTT 405
||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TAAATGGAGAACCGTTT-ATCAAAGTTGCGGAAGTGGATGAATCAGGAACTCAGCCATTT 418
Query 406 GTGGACAGCTTATCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAG 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTGGACAGCTTATCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAG 478
Query 466 AGATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTTGCCTAAG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 AGATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTTACCTAAG 538
Query 526 GTAGCTGATTTCTTCGCGAGGTTAATTCAAAGAGTTGCTCCAAAGAGTTACCAGCAAGCC 585
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 GTTGCTGATTTCTTCGCGAGGTTAATTCAAAGGGTTGCTCCAAAGAGTTACCAGCAAGCT 598
Query 586 GCTGGAGAAGTCTTCGTCACACGAAAATTTTTAGAGAACTTTTGCGGTGATCAGGTGCGG 645
|||||||||||||| |||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 599 GCTGGAGAAGTCTTTGTCACACGGAAGTTTTTAGAAAACTTTTGTGGTGATCAGGTGCGG 658
Query 646 TTCCTAGCTCGGTCTTTTGCAATCCCTGGAAATCATCTTGGGCAGCAAAGTCATGGTTAC 705
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 TTCCTGGCACGGTCTTTTGCAATCCCTGGGAATCATCTTGGGCAGCAAAGTCATGGTTAC 718
Query 706 CGTTGGCCTTATGGTCCTGTAACGATTGTTACACCATTTAATTTTCCACTTGAGATTCCA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGTTGGCCTTATGGTCCTGTAACGATTGTTACACCATTTAATTTTCCACTTGAGATTCCA 778
Query 766 CTACTTCAGTTGATGGGGGCATTATACATGGGTAACAAACCTCTTCTTAAAGTTGACAGC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 CTACTTCAGTTGATGGGGGCATTATACATGGGTAACAAACCTCTTCTTAAAGTGGACAGC 838
Query 826 AAGGTAAGCATTGTAATGGAGCAAATGATGCGACTGCTCCATTATTGTGGTTTACCCGCT 885
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 839 AAGGTAAGCATTGTTATGGAGCAAATGATGCGATTGCTCCACTATTGTGGTTTACCCGCT 898
Query 886 GAAGATGTTGACTTTATAAATTCTGATGGGAAGACAATGAACAAGATATTGTTAGAGGCG 945
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAGATGTGGACTTTATAAATTCTGATGGGAAGACAATGAACAAGATATTGTTAGAGGCG 958
Query 946 AATCCACGGATGACCCTCTTCACGGGTAGTTCTAGAGTAGCCGAAAAGTTGGCACTTGAC 1005
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 AACCCACGGATGACCCTCTTCACGGGTAGTTCTAGAGTAGCTGAAAAGTTGGCACTTGAC 1018
Query 1006 CTTAAAGGTCGAATCAGATTGGAAGATGCTGGGTTTGATTGGAAAGTCTTAGGACCAGAT 1065
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1019 CTTAAGGGTCGAATCAGATTGGAAGATGCTGGATTTGATTGGAAAGTCTTAGGACCAGAT 1078
Query 1066 GTTCAGGAGGTTGATTACGTTGCCTGGCAATGCGATCAAGATGCATACGCTTGCAGTGGA 1125
||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1079 GTTCAGGAGGTTGATTATGTTGCATGGCAATGTGATCAAGATGCATACGCGTGCAGTGGA 1138
Query 1126 CAGAAGTGTTCTGCACAGTCTATGCTTTTTGTTCATGAGAACTGGTCAAAAACCCCTCTT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAGAAGTGTTCTGCACAGTCTATGCTTTTTGTTCATGAGAACTGGTCAAAAACCCCTCTT 1198
Query 1186 GTTTCCAAATTAAAAGAACTAGCGGAAAGACGCAAACTGGAAGACTTAACAATTGGTCCT 1245
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1199 GTTTCCAAATTAAAAGAACTAGCGGAAAGACGCAAACTGGAAGACTTAACCATTGGTCCT 1258
Query 1246 GTCCTCACATTTACAACTGAGGCAATGTTGGAGCACATGGAGAATCTGCTTCAGATTCCT 1305
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTCCTTACATTTACAACTGAGGCAATGTTGGAGCACATGGAGAATCTGCTTCAGATTCCT 1318
Query 1306 GGCTCAAAGCTACTTTTTGGTGGCAAGGAATTGAAGAATCATTCGATTCCTTCTATCTAT 1365
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1319 GGCTCAAAGCTACTCTTTGGTGGCAAGGAATTGAAGAATCATTCGATTCCTTCAATCTAC 1378
Query 1366 GGAGCTTTGGAGCCTACTGCAGTTTATGTTCCAATTGAAGAAATCTTGAAGGATAGTAAA 1425
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1379 GGAGCTTTGGAGCCAACTGCAGTTTATGTTCCCATTGAAGAAATCTTGAAGGATAATAAA 1438
Query 1426 ACCTACGAACTCGTCACCAAAGAAATCTTTGGACCATTTCAGATAGTAACGGAATACAAA 1485
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1439 ACCTACGAACTCGTCACCAAAGAAATCTTTGGACCATTTCAGATTGTAACGGAATACAAA 1498
Query 1486 AAGGATCAACTTCCTCTAGTGTTGGAAGCATTGGAGAGGATGCATGCTCATTTAACTGCA 1545
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1499 AAGGATCAACTTCCTCTAGTGTTGGAAGCATTGGAGAGGATGCACGCTCATCTAACTGCA 1558
Query 1546 GCTGTTGTTTCAAACGATCCCATCTTTCTTCAGGAAGTAATAGGGAACTCAGTGAATGGG 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GCTGTTGTTTCAAACGATCCCATCTTTCTTCAGGAAGTAATAGGGAACTCAGTGAATGGG 1618
Query 1606 ACTACATATGCTGGACTAAGAGGAAGAACAACTGGAGCTCCTCAGAATCACTGGTTTGGA 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACTACATATGCTGGACTAAGAGGAAGAACAACTGGAGCTCCTCAGAATCACTGGTTTGGA 1678
Query 1666 CCTGCGGGGGACCCGAGAGGGGCCGGGATAGGGACACCAGAGGCTATAAAGCTGGTCTGG 1725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1679 CCTGCGGGGGACCCGAGAGGGGCCGGGATAGGGACACCAGAGGCTATAAAGCTGGTTTGG 1738
Query 1726 TCATGCCACAGAGAGGTCATCTATGACTATGGTCCCGTTCCACAAGGTTGGGAACTCCCT 1785
|||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||
Sbjct 1739 TCATGCCACAGAGAAGTCATCTACGATTATGGTCCGGTTCCACAAGGTTGGGAACTTCCT 1798
Query 1786 CCATCTACTTAGAAGTGGTATGTCCACTAATAATAAATAAACTAAGATCTTAGTTTGCTG 1845
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 1799 CCATCTACTTAGAAGTGGTGTGTCCACTAATAATTAATAAACTAAGATCTTAGTGTGCTG 1858
Query 1846 TTGCATCGAATAAATATGAGTTTTGTAGTTT-ATCTCTACGAGTAGTTTCCGTGTGAGGG 1904
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1859 TTGCATCAAATAAATATGAGTTTTGTAGTTTTATCTCTACGAGTAGTTTCCGTGTGAGGG 1918
Query 1905 AATAAGAGCTTTAAACATGAAGTTTTCAACGACGTTGACTTAGTCAAGGGGTAGAGGGAT 1964
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AATAAGAGCTTGAAACATGAAGTTTTCAACGACGTTGACTTAGTCAAGGGGTAGAGGGAT 1978
Query 1965 TAAGA-A-AGAGAG--CTATTGTGAAACTCAGAGGAACA-ATAATGGTTTTTCTTTAGCT 2019
||||| | |||||| ||||||| |||||||| | || | ||| ||| ||| ||||
Sbjct 1979 TAAGACAGAGAGAGAACTATTGTAAAACTCAGTCCACCAGA-AAT--TTT--CTTCAGCT 2033
Query 2020 CAAAGCCAGACAATGATACAAATGTTTTTGAAAGAAGAA 2058
|||||||||||||| ||||||||||||||||||||||||
Sbjct 2034 CAAAGCCAGACAATAATACAAATGTTTTTGAAAGAAGAA 2072
Score = 664 bits (359), Expect = 0.0
Identities = 431/464 (93%), Gaps = 12/464 (3%)
Strand=Plus/Plus
Query 2058 ATTAATAATGTAGCTAATACCCTAATCTGACCGATCTTAAATAATCTATTGAACAAtttt 2117
||||||||||| ||||| |||||||||| | ||||||||||||||||| |||||| ||||
Sbjct 2117 ATTAATAATGTTGCTAAGACCCTAATCTAATCGATCTTAAATAATCTAATGAACAGTTTT 2176
Query 2118 ttttCATCACTATCATGGGAAATA-AATAAAAAGGGACTATACCAGTCCTGATCATTTTG 2176
|||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||
Sbjct 2177 TTTTCATCACTATCATGGGAAA-ACAATAGAAAGGGACTCTACCAGTCCTGATCATTTTG 2235
Query 2177 TTG-TGGTAAACAGACAAATACAACCATGGTGATTGTGTCCTTGAAACAAAAACGCCAAA 2235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 GAGTTGGTAAACAGACAAATACAACCATGGTGATTGTGTCCTTGAAACAAAAACGCCAAA 2295
Query 2236 GTGATCTGCAATGGAGATTTAGTGTTGTACTTTATGTCCAAAAGCTTTGATGATGTGAAC 2295
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2296 GTGATCTGCAATGGAGATTTAGTGTTGTACTTTATGTCCACAAGCTTTGATGATGTGAAC 2355
Query 2296 TAGTAACTTGTCTCCGGTTATACTTCTGACTTGTTGGATTAGTTCGCTCCGCGTAATTCT 2355
||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 2356 TAGTAACTTGTCTCCGGTTATGCTTCTGACTCGTTGGATTAGTTCGCTCCGTGTAATTCT 2415
Query 2356 CCTGTTCTGTTAAATCCAAAGGAAAATCAACAATTAGAATGTGAAAT-----CACCTGAA 2410
||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 2416 CCTATTCTGTTAAATCCAAAGGAAAG-CAACAATTAGAATGTGAAATGAAATCACCTCAA 2474
Query 2411 AAGATAATGGAAGAAGAAACAAACCAGAAAAACAAACACTTACTTGTTGATCTTTGTAAT 2470
|||||||| ||||| ||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 2475 AAGATAATTGAAGAGGAAACAAAC-A-AAAAA-AAACACTTACTTGTTGATCTTTGTAAT 2531
Query 2471 GTTTTTGAATGACAAGTATTTGAGAAGGAGGTAGAAACTTCGAC 2514
|||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2532 GTTTCTGAATGACAAGTATTTGAGAAGGAGGTAGAAACTTGGAC 2575
> AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 | chr5:25097998-25099907
FORWARD LENGTH=1646
Length=1646
Score = 580 bits (314), Expect = 2e-164
Identities = 378/407 (93%), Gaps = 11/407 (3%)
Strand=Plus/Minus
Query 1658 GGTTTGGACCTGCGGGGGACCCGAGAGGGGCCGGGATAGGGACACCAGAGGCTATAAAGC 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 GGTTTGGACCTGCGGGGGACCCGAGAGGGGCCGGGATAGGGACACCAGAGGCTATAAAGC 1587
Query 1718 TGGTCTGGTCATGCCACAGAGAGGTCATCTATGACTATGGTCCCGTTCCACAAGGTTGGG 1777
|||| ||||||||||||||||| |||||||| || |||||||| ||||||||||||||||
Sbjct 1586 TGGTTTGGTCATGCCACAGAGAAGTCATCTACGATTATGGTCCGGTTCCACAAGGTTGGG 1527
Query 1778 AACTCCCTCCATCTACTTAGAAGTGGTATGTCCACTAATAATAAATAAACTAAGATCTTA 1837
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1526 AACTTCCTCCATCTACTTAGAAGTGGTGTGTCCACTAATAATTAATAAACTAAGATCTTA 1467
Query 1838 GTTTGCTGTTGCATCGAATAAATATGAGTTTTGTAGTTT-ATCTCTACGAGTAGTTTCCG 1896
|| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1466 GTGTGCTGTTGCATCAAATAAATATGAGTTTTGTAGTTTTATCTCTACGAGTAGTTTCCG 1407
Query 1897 TGTGAGGGAATAAGAGCTTTAAACATGAAGTTTTCAACGACGTTGACTTAGTCAAGGGGT 1956
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TGTGAGGGAATAAGAGCTTGAAACATGAAGTTTTCAACGACGTTGACTTAGTCAAGGGGT 1347
Query 1957 AGAGGGATTAAGA-A-AGAGAG--CTATTGTGAAACTCAGAGGAACA-ATAATGGTTTTT 2011
||||||||||||| | |||||| ||||||| |||||||| | || | ||| |||
Sbjct 1346 AGAGGGATTAAGACAGAGAGAGAACTATTGTAAAACTCAGTCCACCAGA-AAT--TTT-- 1292
Query 2012 CTTTAGCTCAAAGCCAGACAATGATACAAATGTTTTTGAAAGAAGAA 2058
||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1291 CTTCAGCTCAAAGCCAGACAATAATACAAATGTTTTTGAAAGAAGAA 1245
Score = 466 bits (252), Expect = 5e-130
Identities = 292/311 (94%), Gaps = 3/311 (1%)
Strand=Plus/Minus
Query 2058 ATTAATAATGTAGCTAATACCCTAATCTGACCGATCTTAAATAATCTATTGAACAAtttt 2117
||||||||||| ||||| |||||||||| | ||||||||||||||||| |||||| ||||
Sbjct 1200 ATTAATAATGTTGCTAAGACCCTAATCTAATCGATCTTAAATAATCTAATGAACAGTTTT 1141
Query 2118 ttttCATCACTATCATGGGAAATA-AATAAAAAGGGACTATACCAGTCCTGATCATTTTG 2176
|||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||
Sbjct 1140 TTTTCATCACTATCATGGGAAA-ACAATAGAAAGGGACTCTACCAGTCCTGATCATTTTG 1082
Query 2177 TTG-TGGTAAACAGACAAATACAACCATGGTGATTGTGTCCTTGAAACAAAAACGCCAAA 2235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GAGTTGGTAAACAGACAAATACAACCATGGTGATTGTGTCCTTGAAACAAAAACGCCAAA 1022
Query 2236 GTGATCTGCAATGGAGATTTAGTGTTGTACTTTATGTCCAAAAGCTTTGATGATGTGAAC 2295
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1021 GTGATCTGCAATGGAGATTTAGTGTTGTACTTTATGTCCACAAGCTTTGATGATGTGAAC 962
Query 2296 TAGTAACTTGTCTCCGGTTATACTTCTGACTTGTTGGATTAGTTCGCTCCGCGTAATTCT 2355
||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 961 TAGTAACTTGTCTCCGGTTATGCTTCTGACTCGTTGGATTAGTTCGCTCCGTGTAATTCT 902
Query 2356 CCTGTTCTGTT 2366
||| || ||||
Sbjct 901 CCTATTTTGTT 891
Score = 102 bits (55), Expect = 2e-20
Identities = 59/61 (97%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 2454 TTGTTGATCTTTGTAATGTTTTTGAATGACAAGTATTTGAGAAGGAGGTAGAAACTTCGA 2513
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 895 TTGTTGATCTTTGTAATGTTTCTGAATGACAAGTATTTGAGAAGGAGGTAGAAACTTGGA 836
Query 2514 C 2514
|
Sbjct 835 C 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124765187241
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5