BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496435
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62560.1 | Symbols: | RING/U-box superfamily protein with A... 2671 0.0
> AT5G62560.1 | Symbols: | RING/U-box superfamily protein with
ARM repeat domain | chr5:25109991-25112001 FORWARD LENGTH=2011
Length=2011
Score = 2671 bits (1446), Expect = 0.0
Identities = 1662/1766 (94%), Gaps = 15/1766 (1%)
Strand=Plus/Plus
Query 1 TTTTTAGCTCGGAGCCG---CTTC-TTCTTCATCTTCTTCCTCCTCTCAAAAACCTAA-T 55
||||||||||||||||| |||| ||||||||||||||||||||||||| |||| || |
Sbjct 13 TTTTTAGCTCGGAGCCGCTTCTTCTTTCTTCATCTTCTTCCTCCTCTCAATAACCCAAGT 72
Query 56 TTTTCCTCCGATGGGTGGAAATAAGCAGAGATGGTTCTCTTTCCACCAACGATCCTCATC 115
|||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 73 TTTTTCGCCGATGGGTGGAAACAAGCAGAGATGGTTCTCTTTCCACCAACGATCCTCATC 132
Query 116 CGCCACCACTACAACTATACCACAGCACAAACACGACGAGACTCCACCGGAGTTTCTTTG 175
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 133 CGCCACCACTACTACTTTACCACAACACAAACACGACGAGACTCCACCGGAGTTTCTTTG 192
Query 176 CCCCATCACCGGATTCCTCATGTCGGATCCTGTAGTCGTCTCTTCCGGTCAAACCTTCGA 235
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 193 TCCCATCACCGGATTCCTCATGTCGGATCCCGTCGTCGTCTCTTCCGGTCAAACCTTCGA 252
Query 236 GCGTCTCTCTGTTCAAGTCTGTCGTAACTTAGGGTATGTACCGGATCTCCTAGACGGTAC 295
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 253 GCGTCTCTCTGTTCAAGTCTGTCGTAACTTAGGGTATATACCGGATCTCCTAGACGGTAC 312
Query 296 CCGACCCGATCTCTCCACCGTCATCCCCAATCTCGCCATGAAATCCACCATTTTCAGCTG 355
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 313 CCGACCCGATCTTTCCACCGTCATCCCCAATCTCGCAATGAAATCCACCATTTTCAGTTG 372
Query 356 GTGCGACCGGAAAAAAGTTGACCATCCTCGTCCTCCTGATTCCGCTTACGTCGAAGGCGT 415
||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 373 GTGTGATCGGCAAAAAGTTGACCATCCTCGTCCTCCTGATGCCGCTTACGTCGAAGGCGT 432
Query 416 GGTTCGTGCCCGAATGGATAAAGATCCGAATCCGAGTCCGACTCCGAGTCAAAGCCCGGG 475
||||||||||||||||||||||||||| ||||| |||||| | ||||||| |||||
Sbjct 433 GGTTCGTGCCCGAATGGATAAAGATCCTAATCCAAGTCCG-----G-GTCAAAGTCCGGG 486
Query 476 TCTGGAT-ACT-ACGACTCCGGAGTCTGAGATTCTCCCTCCTGTAGAAGAGGATTCACCT 533
|| || | | | | || ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 487 TCCGGGTGA-TAAGGA-TCCGGAGCCTGAGATTCTCCCTCCTGTAGAAGAGAATTCACCT 544
Query 534 TCGGATTACGATGCTGTGATGGAAGCGATTCGAGCTCGATCGAAGAATTCAATGTCGCCG 593
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 545 TCGGATTACGATGCTGTGATGGAAGCGATTCGAGCTCGATCAAAGAATTCAATGTCGCCG 604
Query 594 ACGACGTCTCTTGAATCGGTGACGATTGGTCAGAGTCCGTATCACCCGGTTCGAGCCGTT 653
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 605 ACGACGTCTCTTGAATCGGTGACGATTGGTCAGAGTTCATATCACCCGGTTCGAGCCGTT 664
Query 654 AGTATGTTCTCTTCTTCAACTAATTCTTCTTCCTCTGGAGTTTTCGCTGGAGCTGATAGT 713
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 665 AGTATGTTCTCTTCTTCAACTACTTCTTCTTCCTCTGGAGTTTTCGCTGGTGCTGATAGT 724
Query 714 CCATTTCGAAACGCTATCTCTTTCTCTTCCTCCGATCACTCTTCTTCTCCGATGTCGCCG 773
||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 725 CCATTTCGAAACGCTATGTCTTTCTCTTCCACTGATCACTCTTCTTCTCCGATGTCACCG 784
Query 774 GAAGAAGAAGAGATCTTCAACAAATTGAGAGGTACCGACATTTTCGACCACGAGCAAGGT 833
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 785 GAAGAAGAAGAGATCTTCAATAAATTGAGAGGTACCGACATTTTCGACCACGAGCAAGGT 844
Query 834 TTGATTCTTCTTAGGAAGATGACGAGATCTGGTGAAGATCTTAGGGTTTCGCTTTGTACA 893
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 845 TTGATTCTTCTTAGGAAGATGACGAGATCTAGTGAAGATCTTCGGGTTTCGCTTTGTACA 904
Query 894 GATCGGATTCTCTCTTTTCTCCGATCACTGCTTGTTTCACGGTACAATATTGTGCAGACA 953
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 905 GATCGGATTCTCTCTTTTCTCCGATCGCTGCTTGTTTCACGGTACAATCTTGTTCAGACT 964
Query 954 AACGCCGCCGCGTCGCTGGTTAATCTCTCGCTGGAGAAACAGAACAAAGTTAAGATCGTG 1013
|||||||| || ||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 965 AACGCCGCTGCTTCGGTGGTTAATCTCTCGTTGGAAAAACAGAACAAAGTTAAGATCGTA 1024
Query 1014 CGGTCAGGATTTGTTCCTCTGTTGATCGACGTTTTGAAATCGGGAACGACGGAGGCGCAG 1073
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1025 CGGTCAGGATTTGTTCCTCTGTTGATCGATGTTTTGAAATCGGGAACGACGGAGGCGCAG 1084
Query 1074 GAACATGTCGCCGGAGCTTTGTTTAGTTTGGCGTTGGAAGATGAGAACAAAATGGTTATC 1133
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1085 GAACATGTTGCCGGAGCTTTGTTTAGTTTGGCGTTGGAAGATGAGAACAAAATGGTGATC 1144
Query 1134 GGAGTTCTCGGTGCGGTTGAGCCGCTTCTTCATGCGCTGCGTTCATCGGAGAGTGAAAGA 1193
|||||||| |||||||| |||||||||||||| ||||| || || |||||||||||||||
Sbjct 1145 GGAGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTCGGTCGTCGGAGAGTGAAAGA 1204
Query 1194 GCGCGTCAAGACGCAGCTCTTGCGCTTTATCATTTGTCGCTTATTCCGAGCAACCGAACA 1253
||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| ||||
Sbjct 1205 GCGCGGCAAGATGCAGCTCTTGCGCTTTACCATTTGTCCCTGATTCCGAGCAATAGAACT 1264
Query 1254 AGGCTGGTTAGAGCTGGTGCGGTGCCAACTCTGCTTTCGATGGTAAGATCCGGCGATTCG 1313
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1265 AGGCTGGTTAGAGCTGGTGCGGTGCCGACTCTGCTTTCGATGGTAAGATCGGGTGATTCG 1324
Query 1314 ACTAGCCGAATTTTGCTAGTACTTTGTAACCTTGCGGCTTGTCCAGACGGAAAAGGCGCG 1373
|||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| |||
Sbjct 1325 ACTAGCCGGATTTTGCTGGTACTATGTAACCTGGCCGCTTGTCCAGACGGAAAAGGTGCG 1384
Query 1374 ATGCTAGACGGAAATGCGGTGGCGATTCTGGTAGGGAAGCTCAGAGAAGTCGGAGGTGGT 1433
||| |||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1385 ATGTTAGATGGAAACGCGGTGGCGATTTTGGTAGGGAAGCTTAGAGAAGTCGGAGGTGGT 1444
Query 1434 GATTCCGAGGCGGCGCGTGAGAACTGTGTGGCGGTTCTGTTGACGTTGTGTCAAGGGAAT 1493
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1445 GATTCAGAGGCGGCGCGTGAGAATTGTGTGGCGGTTCTGTTGACGTTGTGTCAAGGGAAT 1504
Query 1494 TTGAGGTTTAGGGGGTTAGCGAGCGAGGCGGGAGCGGAGGAAGTGTTGATGGAAGTGGAA 1553
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1505 TTGAGGTTTAGGGGGTTGGCGAGTGAGGCGGGAGCGGAGGAAGTGTTGATGGAAGTGGAA 1564
Query 1554 AAGAATGGGAATGAACGGGTGAAGGAGAAGGCGTCGAAGATTCTGCAGGCGATgagagga 1613
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1565 GAGAATGGGAATGAACGGGTGAAGGAGAAGGCGTCGAAGATTCTGCTGGCGATGAGAGGA 1624
Query 1614 ggaggcggaggagagagTGAGTATGGGGAAAATGCGGAGGCGCGTGACTGGAACCGTATG 1673
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1625 GGAGGCGGAGGAGAGAGTGAGTTTGGGGAAAATGCGGAGGCGCGTGAGTGGAACCGTATG 1684
Query 1674 CTTGAAGCGACTGGGCTAAGTCGGACTCAGTTTCAAGGAGGGCAAAATGGAGGTTTTGCT 1733
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1685 CTTGAAGCGACTGGGCTAAGTCGGACTCAGTTTCAAGGAGGGCAAAATGGGGGTTTTGCT 1744
Query 1734 TATTCCTCCCAGTTCTAGCttttttt 1759
||||||||||||||||||||||||||
Sbjct 1745 TATTCCTCCCAGTTCTAGCTTTTTTT 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5