BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496438

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62575.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   739    0.0  


> AT5G62575.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 
growth stages; BEST Arabidopsis thaliana protein match is: 
unknown protein (TAIR:AT3G47833.1); Has 35333 Blast hits to 
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; 
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other 
Eukaryotes - 9610 (source: NCBI BLink). | chr5:25117520-25118892 
FORWARD LENGTH=652
Length=652

 Score =  739 bits (400),  Expect = 0.0
 Identities = 452/476 (95%), Gaps = 8/476 (2%)
 Strand=Plus/Plus

Query  1    GATCTTCGATACTCGGCTGGGCATGGCGTTTTTGCTCAACAACGCTTCAATTTCATCTCA  60
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GATCTTCGATACTCGTCTGGGCATGGCGTTTTTGCTCAACAACGCTTCAATTTCATCTCA  60

Query  61   TTTCCGTTCGTCTTCTTCACAGAAGACGGGTGATGCTTTATCAATATCGCGTCGTGGATT  120
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTTACGCTCGTCTTCTTCACAGAAGACGGGTGATGCTTTATCAATATCGCGTCGTGGATT  120

Query  121  CCACATCGAGCCAGGAACTCGAGAGAAAGCTCTCTTGGCTGAAGATTCTGCTTTGAAGAG  180
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCACATTGAGCCAGGAACTCGAGAGAAAGCTCTCTTGGCTGAAGATTCTGCTTTGAAGAG  180

Query  181  ATTCAAGTTTCATAAGAAAAGTGTGCACAAATTGAAGAGGATTGGTGATGTGCTCACAGT  240
            |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  181  ATTCAAGTCTCATAAGAAAAGTGTGCACAAACTGAAGAGGATTGGTGATGTGCTCACTGT  240

Query  241  CGTTGTTGTTGCAGGATGTTGCTATGAAATCTATGTCAAAGCTGTGATTG-GAAAAGAAG  299
             |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct  241  TGTTGTTGTTGCAGGATGTTGCTATGAAATCTATGTCAAAGCTGTGA-TGAAAAAAGAAG  299

Query  300  CTCTGGCTGC-GGGAAAAAGCTCCTGAGTCTTCTTATCTTTGTGTGCCTTTTTCTATTT-  357
            |||||||||| ||| |||||||| ||||| ||||| ||||||| ||||||||| | ||| 
Sbjct  300  CTCTGGCTGCAGGG-AAAAGCTCATGAGTGTTCTTGTCTTTGTATGCCTTTTTGT-TTTA  357

Query  358  TCCTTTATACATTGTCTCTTTCTAATAATCTCACAATAATGTTTGTTTACTCAATGAAAA  417
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  TCCTTTATACAGTGTCTCTTTCTAATAATCTCACAATAATGTTTGTTTACTCAATGAAAA  417

Query  418  TGGCATCTAATAAAGTAGACAAAAAGAAAAAGACATATTGTCCAGGGAAACCAAAC  473
            |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct  418  TGGCATCTAATAAAGTAGACTAAAAGAAAAAGACAT-T-GTCCAGGGAAACCAAAC  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5