BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496441
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1932 0.0
> AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:25132899-25134788 REVERSE
LENGTH=1252
Length=1252
Score = 1932 bits (1046), Expect = 0.0
Identities = 1156/1207 (96%), Gaps = 16/1207 (1%)
Strand=Plus/Plus
Query 1 ATTATCACTTGCCTCATATCTCTTACCTTCTCCGATCTCTCTCTCTGTTTGTCCACCTCA 60
||||||||| || ||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATTATCACTACCCACATCTGTCTTACCTTCTCCGATCTCTCTCTCTATTTGTCCACCTCA 60
Query 61 TACACAACCCTATAAACACGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTC--TTTTT 118
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CACACAACCCTATAAACAAGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTCTTTTTTT 120
Query 119 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCC-TTTTACGAT 177
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCCTTTTTACGAT 180
Query 178 CATCGGAAATGGACCCTCCACTTGTGAACGATTCCTCCTTCTCCGCAGCTAATCCTTCTT 237
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 181 CATCGGAAATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTT 240
Query 238 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 300
Query 298 GTTTAGCCGTTAACTCCGGTCGAGTCTTCACTCGGTCTGAACATTCCGGCAATAAAGACG 357
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 301 GTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACG 360
Query 358 TCTCGGCGGCAGAGGAATCTACTGTCACCGATCTAACTGCTGGCTGGGGAGGTAGAAAGA 417
|||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 361 TCTCCGCGGCTGAGGAATCTACAGTCACCGATCTAACTGCTGGCTGGGGAAGTAGAAAGA 420
Query 418 CTAGAGATTTGAACTCTGAGGACGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 477
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 480
Query 478 ATGAATTGAAAGAATCAGGCGATAAGAAAAGAAAACTTTGTGGATCTGAAAGTGGAAATG 537
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ATGAATTGAAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATG 540
Query 538 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGGTGGAAGCAAAG 597
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGG---AAGCAAAG 597
Query 598 CAACGGAACAGAAGAACAAACCAGAGCCACCGAAGGATTATATCCATGTGAGAGCAAGAA 657
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 598 CAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAA 657
Query 658 GAGGACAAGCTACTGACCGGCATAGTCTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 GAGGACAAGCTACTGACCGGCATAGTTTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717
Query 718 AGAAGATGACAGCTCTTCAAGATATAATTCCGGGATGTAATAAGATAATCGGAAAAGCCC 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 AGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCC 777
Query 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCGTTGCAGCGGCAAGTTGAGTTTCTGT 837
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTAT 837
Query 838 CAATGAAGCTAGAAGTTGTTAACTCAGGTGCAAGTACTGGTCCAACAATAGGAGTTTTTC 897
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 838 CAATGAAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAGGAGTTTTTC 897
Query 898 CTTCTGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATATGAGCAACAAG 957
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 CTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAG 957
Query 958 AAGCTAACGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGCTAATGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017
Query 1018 TTAACCGAACCACATaaaaaaaaaGTCTTTCTTTGATTGATGGATGTGTTTTGTAGGCAG 1077
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1018 TTAACCGAACCACATAAAAAAGA-GTCTTTCTCTGATTGATGGATGTGTTTTGTAGGCAG 1076
Query 1078 TAAAAATGAATGCAACCCTTTAttttttttC-T--G--TGTGTATCATTTTGCTGTTATA 1132
|||||||||||||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct 1077 TAAAAATGAATGCAACCCTTTATTTTTTATCCTATGCGTGTGTATCATTTTGCTGTTATA 1136
Query 1133 TCATCATAAGATAGA-TATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1191
|||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCAT-A-A-GATAGAATATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1193
Query 1192 TATTGTC 1198
|||||||
Sbjct 1194 TATTGTC 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5