BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496447
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62640.3 | Symbols: | proline-rich family protein | chr5:25... 2248 0.0
> AT5G62640.3 | Symbols: | proline-rich family protein | chr5:25149433-25152541
REVERSE LENGTH=1964
Length=1964
Score = 2248 bits (1217), Expect = 0.0
Identities = 1421/1514 (94%), Gaps = 35/1514 (2%)
Strand=Plus/Plus
Query 229 TAACAAGAAAGAGAGGCAAAAGGTTA-GAGAGGTTGGAATTTTGAAGAAGGATCCTGAAC 287
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 346 TAACAAGAAAGAGAGGCAAAAGG-TACGAGAGGTTGGAATTTTGAAGAAGGATCCTGAAC 404
Query 288 AAATCAAGGAACAGATCAGGAAACTTGATATGTCTAAGGCGGAAGGTGCTTTGGACAAAG 347
| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 405 AGATCAAGGATCAGATCAGGAAGCTTGATATGTCAAAGGCGGAAGGTGCTTTGGACAAAG 464
Query 348 CAAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTAAAAATGGTGGTGAAGAAGAGAA 407
||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 465 CAAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTTAAAA---TGGT----------- 510
Query 408 AGGAATATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTC 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 -GGAATATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTC 569
Query 468 ATCTACCCCCTCAACGAAGATTAACTGGCGAAGAGGACTTAAAACCAGAGGACTCTGTGT 527
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 570 ATCTACCCCCTCAGCGAAGATTAACTGGCGAAGAGGACTTAAAACCAGAGGACTCTGTTT 629
Query 528 ATTATCACCCTACTTTGAACCCAACTGGTGCCCCACCCCCGGGAAAGCCACCAATGTATA 587
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 630 ATTATCACCCTACTTTGAACCCAACTGGTGCACCACCCCCGGGAAAGCCACCAATGTATA 689
Query 588 A-T--T-CAT----C--G--A-----T-AGATGGTGCTTCATCTAGTGGTGCTGCATTGT 629
| | | ||| | | | | ||||||||||||||||||| ||||||||||||
Sbjct 690 ATTCATCCATAGGACTTGCTATCTCCTCAGATGGTGCTTCATCTAGTAGTGCTGCATTGT 749
Query 630 CTTCTATTACCGAGTCAGAAGATTCCGCCTTAGTTACCCCTCCTCCACTTCCTCCTCTAC 689
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 750 CTTCTATTACCGAGTCAGAAGATTCCGTCTTAGTTAATCCTCCTCCACTTCCTCCTCTAC 809
Query 690 CGGATGGGAATAATGCTTTATCTGCTTCTTTGCCACTTCCACCTCCACCTCCTTTGCCAC 749
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 810 CGGATGGGGATAATGCTTTATCTGCTTCTTTGCCACTTCCACCTCTACCTCCTTTGCCAC 869
Query 750 CAACTACAGGCCTTACTTTGCCACATTCATCATTTCCACCACCACCTCCGGGGCCACCAC 809
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 870 CAACTACAGGCCTTACTTTGCCACATTCACCATTTCCACCACCACCTCCGGGGCCACCAC 929
Query 810 CAAAAGAGCAGGATTTGGTTCGtcctcctcttcctccacctcctccacttcctcaatctt 869
|||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 930 CAAAAGAGCAGGATTTTGTTCGTCCTCCTCTTCCCCCACCTCCTCAACTTCCTCAATCTT 989
Query 870 cccaaccacctcctcctGGTCTAAGTGGAAGTGAAGGCGATGGTAGATTCCCGGAATCAT 929
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 990 CCCAACCACCTCCTCCTGGTCTAAGTGGAAGTCAAGGCGATGGTAGATTCCCGGAATCAT 1049
Query 930 CAGATTTCACCTTTGACAATCGCAAGAACGCTAATATAACTTCCGTCCCTCCTCTCCCAC 989
||||||| ||||| |||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 1050 CAGATTTTACCTTCGACAATCGCATGAATGCTAATATAACTTCCGTCCCTCTTCTCCCAC 1109
Query 990 CACCCGGCCTTCCAAACAACGAATCTGAGAGTGGTCCAGCAGAATCTAACGGGAGTAGTT 1049
|||| ||| |||||| ||| |||||||||||| |||| ||||||||||||| |||||||
Sbjct 1110 CACCTGGCATTCCAAGCAATGAATCTGAGAGTCGTCCTGCAGAATCTAACGCCAGTAGTT 1169
Query 1050 TTCAAAACGCTAACCTCTCTAAGATGGTTGcaccaccaccaccaccaccTTTACATCAGC 1109
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1170 TTCAAAACGCTAACCTCTCAAAGATGGTTGCACCACCACCACCAGCACCTTTACATCAGC 1229
Query 1110 AGCATCAATCAACATTTGCAGGAGCTGCTGCTCCACTGTCTAATTTTCAACCTGATGTTC 1169
| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1230 AACATCAATCAACATTTGCAGGAGCTGCTGCTTCACTGACTAATTTTCAACCTGATGTTC 1289
Query 1170 ATCCGCCTCCAGGAATGTTGCGTTTTCCACCTCCACCGCCTCCACTCGATATGCATCCTC 1229
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 ATCCTCCTCCAGGAATGTTGCGTTTTCCACCTCCACCGCCTCCACTCGATATGCATCCTC 1349
Query 1230 CTCATCCAGGAATGTTCGGTGGTCATCTGATCCCGAGACCACCGTATGGCCCACCGCCTG 1289
||||||| |||||||| | ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1350 CTCATCCTGGAATGTTTGTTGGTCATCTAATCCCAAGACCACCGTATGGCCCACCGCCTG 1409
Query 1290 GACCGCCTCCTATGATGAGACCGCCGCTTCCACCAGGACCACCACCGTCTAGTTTTCAAG 1349
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1410 GACCGCCTCCTATGATGAGACCGCCACTTCCACCAGGACCACCACCGTCTAGTTTTCAAG 1469
Query 1350 ATGGTCAAGCAATGATCAGACCATATGTACCAAACAAACCATCTTTTGTAAAATCCGCTG 1409
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 ACGGTCAAGCAATGATCAGACCATATGTACCAAACAAACCATCTTTTGTAAAATCCGCTG 1529
Query 1410 CTCCTACTGTTGTCAGGAGACCACTCGCTCAACACACACCTGAGCTTACATCCATGGTCC 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 CTCCTACTGTTGTCAGGAGACCACTCGCTCAACACACACCTGAGCTTACATCCATGGTCC 1589
Query 1470 CTGCGTCGGTTCGAGTCAAAAGAGAATCAGCAACTGTGACCAAACCAAAGCCAAAGACTT 1529
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1590 CTGCGTCGGTTCGAGTCAGAAGAGAATCAGCAACTGTGACGAAACCAAAGCCAAAGACTT 1649
Query 1530 CGATAGCCACAAGCTTGAGTTTTACACCAAGGGCTATGGCTTCTGCTGCATCGGTGAAGG 1589
|||||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1650 CGATAGCCTCGAGCTTGAGTTTTACACCAAGAGCTATGGCTTCTGCTGCAACGGTGAAGG 1709
Query 1590 TAGAGTCAGCCAAGACATCTGCAGCTTCAAAGCCACAGAGCATTGATGATTCGTACACAG 1649
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 TAGAGCCAGCCAAGACATCTGCAGCTTCAAAGCCACAGAGCATTGATGATTCGTACACAG 1769
Query 1650 CTTTCTTAGAGGACATGAAAGCTCTTGGAGCACTTGATGGATAAACGTTAGACTTATAGT 1709
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 1770 CTTTCTTAGAGGACATGAAAGCTCTTGGCGCACTTGATGGATAAACTTTAGAGTTGTAGT 1829
Query 1710 ATTCAAACTAAGTT 1723
||||||| |||||
Sbjct 1830 CTTCAAACAAAGTT 1843
Score = 235 bits (127), Expect = 1e-60
Identities = 136/140 (97%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 91 ATCTGTGAACAAATCCTAAATCGGTGGGAGGGAGATTGAAGAACGGTAAATCGG-AAATA 149
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 133 ATCTGTGAGCAAATCCTAAATCGGTGGGAGGGAGATTGAAGAACGGTAAA-CGGAAAATA 191
Query 150 TGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATTC 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 TGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATTC 251
Query 210 GCAAGAGGGAAATTAAGCGT 229
||||||| ||||||||||||
Sbjct 252 GCAAGAGAGAAATTAAGCGT 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85190324865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5