BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496448 Length=1769 Score E Sequences producing significant alignments: (Bits) Value AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:2515... 2571 0.0 > AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:25152625-25155935 REVERSE LENGTH=1901 Length=1901 Score = 2571 bits (1392), Expect = 0.0 Identities = 1554/1630 (95%), Gaps = 20/1630 (1%) Strand=Plus/Plus Query 1 CCGAACCGAACAGTCAGGTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 60 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 43 CCGAACAGAACAGTCAGTTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 102 Query 61 GCCGAATTTCTCCACAGCGCCGTAACCTCAATC-ATTCCTC--TCA------Tc--ccc- 108 |||||||||||||| ||||| |||||||||||| |||||| ||| || ||| Sbjct 103 GCCGAATTTCTCCATAGCGCGGTAACCTCAATCTCTTCCTCAATCATTCCTCTCTTCCCT 162 Query 109 cccAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 CCCAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 222 Query 169 TCGTCCCCATTCGAATCGACGGTGAAGAGCTCATCATCCACGTCGTCTTCCGGCCTTAAT 228 |||||||| |||||||||||||| |||||| |||||||| |||| || |||||||||||| Sbjct 223 TCGTCCCCTTTCGAATCGACGGTCAAGAGCACATCATCCGCGTCCTCCTCCGGCCTTAAT 282 Query 229 TCAACGGTTAGGATTTCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCCTTCGTC 288 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 283 TCAACGGTTAGGATATCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCTTTCGTC 342 Query 289 GGCCAGGTCTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 348 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 GGTCAGGTGTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 402 Query 349 TTCGATATTCCTTTCATCTCCAAGAGGACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 408 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 403 TTCGATATTCCTTTCATCTCCAAGAGAACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 462 Query 409 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 522 Query 469 GTTTCATATGTTAAAAAACTAAATATTCCAAGCGGAGTGGTTGGGGCTTGTCGACTTGAT 528 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 523 GTTTCATATGTTAAAAAACTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGAT 582 Query 529 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 642 Query 589 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACAAGA-TGGTAGAAA-ACAAA 646 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||| Sbjct 643 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACA-GAATGGTA-AAACACAAA 700 Query 647 AGGTAGAGGGCGTCCCTGTTTTCGGTGCTCAAAACTTGGACATCGCTGTTGCAACTGCAG 706 |||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 701 AGGTGGAGGGTGTCCCTGTTTTCGGTGCTCAAAACCTGGACATTGCTGTTGCAACTGCAG 760 Query 707 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTAGATAACATTCTTG 766 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 761 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTTGATAACATTCTGG 820 Query 767 AAGAGTCCGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 826 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 AAGAGTCTGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 880 Query 827 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 940 Query 887 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCAGTTCCGGAATTCCTTTGA 946 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 941 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCACTTCCGGAATTCCTTTGA 1000 Query 947 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1060 Query 1007 GCAGTAGATGGTTTCGAAAAGCCACGGGTATTCAGCCAAAGTTACCTTATTTGGTTGATT 1066 | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1061 GTAGTAGATGGTTTCGAAAAGCCACGGGTATCCAGCCAAAGTTACCTTATTTGGTCGATT 1120 Query 1067 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACTAGATGTC 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1121 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACAAGATGTC 1180 Query 1127 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTGCTTAGAGTAGAAGATAATAGTC 1186 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1181 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTACTTAGAGTAGAAGATGATAGTC 1240 Query 1187 CAAGCGAAGAC-GAAAAGAGACAGCAAAATCTCTGGTTTCCTTTTGGAGATTGGATTAAT 1245 |||| |||| | ||||||||||||||| |||||||||||||||||||||||||||| | | Sbjct 1241 CAAGTGAAG-CTGAAAAGAGACAGCAACATCTCTGGTTTCCTTTTGGAGATTGGATCAGT 1299 Query 1246 CACTCTGAATCGAA-AAAAGAACACACTCATCATAAGGGTCCATCAGATGGAAGGGATAT 1304 ||||||| ||| || |||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct 1300 CACTCTGTATC-AAGAAAAGAACACACACATCACAAGGGTTCATCAGATCAAAGGGATAT 1358 Query 1305 GGAATCTAGAGAGAGAGAAATGCTGCGAAGTCCTTTCTTACCAAAGATAACAATGGTAGG 1364 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1359 GGAATCTAGAGAAAGAGAAATGCTGCGAAGTCCATTCTTACCAAAGATAACAATGGTAGG 1418 Query 1365 GATTTCAACAGGAGAAGCTGCACAAATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1424 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1419 GATTTCAACAGGAGAAGCTGCACAGATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1478 Query 1425 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAATGATCATGGTTCGAAACGTTATGA 1484 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 1479 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAACGATCATGGTTCAAAACGTTACGA 1538 Query 1485 CCCTCGAAAGATGGAAGAGAGAGATCCTCTTTTTGTTGCAAACGTCGGAGATTACTATTC 1544 | ||| |||||| ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1539 CTCTCTAAAGATTGAAGAGAGAGATCCTCTATTTGTTGCAAACGTCGGAGACTACTATTC 1598 Query 1545 GGGTATGGCGAAAGCTGGTTCTGCTCGGTTGTCACGTCGAGGGGATGACCAGTAACGAAA 1604 |||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1599 GGGTTTGGCTAAAGCTGGTTCTGCTCGGTTGTCACGTAGAGGTGATGACCAGTAACGAAA 1658 Query 1605 CACATCCTAT 1614 |||||||||| Sbjct 1659 CACATCCTAT 1668 Score = 56.5 bits (30), Expect = 8e-07 Identities = 33/34 (97%), Gaps = 1/34 (3%) Strand=Plus/Plus Query 1614 TTGTGTGAATTGCTCAAGCCTAGTTACTT-TTGT 1646 ||||||||||||||||||||||||||||| |||| Sbjct 1684 TTGTGTGAATTGCTCAAGCCTAGTTACTTATTGT 1717 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87499549935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5