BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496448
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:2515... 2571 0.0
> AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:25152625-25155935
REVERSE LENGTH=1901
Length=1901
Score = 2571 bits (1392), Expect = 0.0
Identities = 1554/1630 (95%), Gaps = 20/1630 (1%)
Strand=Plus/Plus
Query 1 CCGAACCGAACAGTCAGGTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 CCGAACAGAACAGTCAGTTTAATGGGTTCGCCGGATAAGCAACATCGCCGCCACGTCGCC 102
Query 61 GCCGAATTTCTCCACAGCGCCGTAACCTCAATC-ATTCCTC--TCA------Tc--ccc- 108
|||||||||||||| ||||| |||||||||||| |||||| ||| || |||
Sbjct 103 GCCGAATTTCTCCATAGCGCGGTAACCTCAATCTCTTCCTCAATCATTCCTCTCTTCCCT 162
Query 109 cccAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CCCAAAACGGCGCCGTCTCGTGTATGCCTCCCACTTAGATTCTCGGTATCAGACGATGTC 222
Query 169 TCGTCCCCATTCGAATCGACGGTGAAGAGCTCATCATCCACGTCGTCTTCCGGCCTTAAT 228
|||||||| |||||||||||||| |||||| |||||||| |||| || ||||||||||||
Sbjct 223 TCGTCCCCTTTCGAATCGACGGTCAAGAGCACATCATCCGCGTCCTCCTCCGGCCTTAAT 282
Query 229 TCAACGGTTAGGATTTCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCCTTCGTC 288
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 283 TCAACGGTTAGGATATCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCTTTCGTC 342
Query 289 GGCCAGGTCTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 348
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GGTCAGGTGTTTAGTATGTGTGACCTTACTGGGACTGGTCTAATGGCTGTTTCTACTCAC 402
Query 349 TTCGATATTCCTTTCATCTCCAAGAGGACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 408
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 403 TTCGATATTCCTTTCATCTCCAAGAGAACACCTGAGTGGCTAAAGAAAATGTTTTCGACT 462
Query 409 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCA 522
Query 469 GTTTCATATGTTAAAAAACTAAATATTCCAAGCGGAGTGGTTGGGGCTTGTCGACTTGAT 528
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 523 GTTTCATATGTTAAAAAACTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGAT 582
Query 529 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TTGGCATATGAGCATTTCAAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGA 642
Query 589 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACAAGA-TGGTAGAAA-ACAAA 646
||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 643 CAGGTGAAGGCTGCCAACAAACTTCTCAAGTCAATGCCACA-GAATGGTA-AAACACAAA 700
Query 647 AGGTAGAGGGCGTCCCTGTTTTCGGTGCTCAAAACTTGGACATCGCTGTTGCAACTGCAG 706
|||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 701 AGGTGGAGGGTGTCCCTGTTTTCGGTGCTCAAAACCTGGACATTGCTGTTGCAACTGCAG 760
Query 707 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTAGATAACATTCTTG 766
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 761 ATGGAATTAAGTGGTATACCCCATACTTCTTTGATAAAGCTGTACTTGATAACATTCTGG 820
Query 767 AAGAGTCCGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 826
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 AAGAGTCTGTAGATCAACATTTCCATACTTTAATCCAAACCCGGCATGTGCAACGACGAC 880
Query 827 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GGGATGTTGTTGACGATAGTTTAGCTTCAGAGGTTATGGAAGAGATGGGAGATAGCATGC 940
Query 887 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCAGTTCCGGAATTCCTTTGA 946
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 941 TAGAGCCGCCAGAGGTTCAAGAAGCCATGGAGGAGATTGGCACTTCCGGAATTCCTTTGA 1000
Query 947 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GTGTTGTGGCAAAGGCTGCAGAGATTCAGCTCCTATATGCCGTTGACAGAGTACTTTTAG 1060
Query 1007 GCAGTAGATGGTTTCGAAAAGCCACGGGTATTCAGCCAAAGTTACCTTATTTGGTTGATT 1066
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1061 GTAGTAGATGGTTTCGAAAAGCCACGGGTATCCAGCCAAAGTTACCTTATTTGGTCGATT 1120
Query 1067 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACTAGATGTC 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1121 CTTTTGAAAGAAGGAGTGCATTTTCTATCCAAAGAGCGTCAGGGTCAGCAACAAGATGTC 1180
Query 1127 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTGCTTAGAGTAGAAGATAATAGTC 1186
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1181 TTGGTGATTCAGTAGAAGCAGATACTTCCGCATCACTACTTAGAGTAGAAGATGATAGTC 1240
Query 1187 CAAGCGAAGAC-GAAAAGAGACAGCAAAATCTCTGGTTTCCTTTTGGAGATTGGATTAAT 1245
|||| |||| | ||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 1241 CAAGTGAAG-CTGAAAAGAGACAGCAACATCTCTGGTTTCCTTTTGGAGATTGGATCAGT 1299
Query 1246 CACTCTGAATCGAA-AAAAGAACACACTCATCATAAGGGTCCATCAGATGGAAGGGATAT 1304
||||||| ||| || |||||||||||| ||||| |||||| |||||||| |||||||||
Sbjct 1300 CACTCTGTATC-AAGAAAAGAACACACACATCACAAGGGTTCATCAGATCAAAGGGATAT 1358
Query 1305 GGAATCTAGAGAGAGAGAAATGCTGCGAAGTCCTTTCTTACCAAAGATAACAATGGTAGG 1364
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1359 GGAATCTAGAGAAAGAGAAATGCTGCGAAGTCCATTCTTACCAAAGATAACAATGGTAGG 1418
Query 1365 GATTTCAACAGGAGAAGCTGCACAAATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1419 GATTTCAACAGGAGAAGCTGCACAGATGAGTAAGGCTAATCTCAAGAAAACAATGGAAGA 1478
Query 1425 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAATGATCATGGTTCGAAACGTTATGA 1484
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1479 TTTAACAGAAGACTTGGAGCAATCTGATGAAGGGAACGATCATGGTTCAAAACGTTACGA 1538
Query 1485 CCCTCGAAAGATGGAAGAGAGAGATCCTCTTTTTGTTGCAAACGTCGGAGATTACTATTC 1544
| ||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1539 CTCTCTAAAGATTGAAGAGAGAGATCCTCTATTTGTTGCAAACGTCGGAGACTACTATTC 1598
Query 1545 GGGTATGGCGAAAGCTGGTTCTGCTCGGTTGTCACGTCGAGGGGATGACCAGTAACGAAA 1604
|||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1599 GGGTTTGGCTAAAGCTGGTTCTGCTCGGTTGTCACGTAGAGGTGATGACCAGTAACGAAA 1658
Query 1605 CACATCCTAT 1614
||||||||||
Sbjct 1659 CACATCCTAT 1668
Score = 56.5 bits (30), Expect = 8e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 1614 TTGTGTGAATTGCTCAAGCCTAGTTACTT-TTGT 1646
||||||||||||||||||||||||||||| ||||
Sbjct 1684 TTGTGTGAATTGCTCAAGCCTAGTTACTTATTGT 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87499549935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5