BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496454
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62720.1 | Symbols: | Integral membrane HPP family protein ... 1415 0.0
AT3G47980.1 | Symbols: | Integral membrane HPP family protein ... 503 1e-141
> AT5G62720.1 | Symbols: | Integral membrane HPP family protein
| chr5:25191842-25195009 FORWARD LENGTH=1023
Length=1023
Score = 1415 bits (766), Expect = 0.0
Identities = 849/890 (95%), Gaps = 2/890 (0%)
Strand=Plus/Plus
Query 1 GTCTCTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTGTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60
Query 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120
Query 121 ATTTCTCATGGCTTCTGTTCCGGTGAAACCACTACCTCTTCTTCGCCGGAACATCACCTC 180
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 ATTTCTCATGGCTTCTGTTCCGGTGAGACCTCTACCTCTTCTTCGCCGGAACATCACCTC 180
Query 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTTTCTCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTCTCTCGG 240
Query 241 GATCTTTACGTATAAAGAATCCTTGAGGCAAATGAGAACTCCAGCGTCTTT-AAGCCACC 299
||||| ||||||| | |||| |||| |||||| | |||||| || || | || |||||
Sbjct 241 GATCTCTACGTATGATGAATTTTTGAAGCAAATAAAAACTCCGGCAACTGTGAA-CCACC 299
Query 300 GCCGGAGAGTAAGTACGGTGGTGTCATCGGCGGGAAACTTGACGGCGCCGTCGTGGGACT 359
| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 300 GGCGGCGAGTAAGTACGGTGGTGGCGTCGGCGGGAAACTTGACGGCGCCGTCGTGGGATT 359
Query 360 CGTGGAAGCCAGATAAGACGGCGGCGGCTACGGCTCTGTTGCTGAGTGACGTCATTTGGC 419
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 360 CGTGGAAGCCTGATAAGACGGCGGCGGCTACGGCTCTTTTGCTGAGTGACGTCATATGGC 419
Query 420 CTGCAGCTGGAGCGTTTGCGGCAATGGCAATATTGGGAAGAATGGATCAAATGCTATCTC 479
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 CTGCTGCTGGAGCGTTTGCGGCAATGGCATTATTGGGAAGAATGGATCAAATGCTATCTC 479
Query 480 CAAAAGGGATTTCAATGTCAGTTGCACCACTTGGTGCTGTCTCCGCCATTCTTTTCATCA 539
| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 480 CGAAAGGCATTTCAATGTCAGTTGCACCACTTGGCGCAGTCTCCGCCATTCTTTTCATCA 539
Query 540 CTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTTTTGGCTCAAATAGGTTGTGCTG 599
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 CCCCTTCTGCTCCTGCTGCTCGGAAATACAATATATTTTTGGCTCAAATAGGTTGTGCTG 599
Query 600 CGATTGGAGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGATTGGGGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659
Query 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719
Query 720 TACCATTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTATGCATTGT 779
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 TACCACTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTACGCATTGT 779
Query 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTATGCCTTCTCCAATCGATCGTATGTTACTTGA 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTCTGCCTTCTCCAATCGATCGTATGTTACTTGA 839
Query 840 AGGAAAACATGAAATTTTGATGAATCATCAAGCAACACGTACGATCGAAT 889
||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 840 AGGAAAACATGAAATTTTGATGAATCACCAAGCGACATGTACGATCGAAT 889
> AT3G47980.1 | Symbols: | Integral membrane HPP family protein
| chr3:17710374-17712866 FORWARD LENGTH=1097
Length=1097
Score = 503 bits (272), Expect = 1e-141
Identities = 437/516 (85%), Gaps = 14/516 (3%)
Strand=Plus/Plus
Query 353 TGGGACTCGTGGAAGCCAGATAAGACGGCGGCGGCTACGGCTCTGTTGCTGAGTGACGTC 412
||||| || |||||||| || ||||| | ||| | ||||| || |||||||||||||
Sbjct 362 TGGGAGTCTTGGAAGCCGGAAAAGAC--C-ACGG-T--GGCTCCGTCGCTGAGTGACGTC 415
Query 413 ATTTGGCCTGCAGCTGGAGCGTTTGCGGCAATGGCAATATTGGGAAGAATGGATCAAATG 472
|| ||||||||||| ||||| |||||||| ||||| ||| |||||||||| |||||||||
Sbjct 416 ATCTGGCCTGCAGCAGGAGCCTTTGCGGCGATGGCGATAATGGGAAGAATAGATCAAATG 475
Query 473 CT-ATCTCCAAAAGGGATTTCAATGTCAGTTGCACCACTTGGTGCTGTCTCCGCCATTCT 531
|| | | || |||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 476 CTAAAC-CCTAAAGGGATCTCAATGTCGGTTGCACCACTTGGTGCTGTCTCTGCCATTCT 534
Query 532 TTTCATCACTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTTTTGGCTCAAATAGG 591
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 CTTCACCACTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGG 594
Query 592 TTGTGCTGCGATTGGAGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAG 651
|||||| || ||||||||| | || ||||||| ||| || ||| ||||||| ||||| ||
Sbjct 595 TTGTGCAGCCATTGGAGTGTTGGCGTTCTCCGCCTTTGGGCCAAGCTGGCTAGCCCGCAG 654
Query 652 TGTCGCCCTCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGC 711
| ||| ||||||||||||||||| || |||||||| ||||||||||| || || |||||
Sbjct 655 TACCGCTCTCGCCGCTTCCATCGCGTTCATGGTCATCACTCGTGCCAACCATCCGCCTGC 714
Query 712 GGCGAGCTTACCATTAATGTTCATAGATGGAGCAAAGTTCCATCA-CTTGAA-TTTCTGG 769
|||||| |||||| || |||| ||||| ||||||||||| ||| | || ||| ||| |||
Sbjct 715 GGCGAGTTTACCACTACTGTTTATAGACGGAGCAAAGTTGCATAAACT-GAACTTT-TGG 772
Query 770 TATGCATTGTTCCCAGGTGCAGCTGCTTGTGTCATCCTATGCCTTC-TCCAATCGATCGT 828
|| ||||| ||||| |||||||| |||||| || | || ||| ||| ||||| |||||||
Sbjct 773 TACGCATTATTCCCCGGTGCAGCCGCTTGTATCCTTCTCTGC-TTCCTCCAAGCGATCGT 831
Query 829 ATGTTACTTGAAGGAAAACATGAAATTTTGATGAAT 864
||||||||||||||||| | ||||||||| ||||
Sbjct 832 GGGTTACTTGAAGGAAAACTTAAAATTTTGACGAAT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5