BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496456
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62740.1 | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-co... 1554 0.0
> AT5G62740.1 | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing
membrane-associated protein family | chr5:25200947-25202756
FORWARD LENGTH=1145
Length=1145
Score = 1554 bits (841), Expect = 0.0
Identities = 984/1052 (94%), Gaps = 14/1052 (1%)
Strand=Plus/Plus
Query 1 AACTTAGCTCTTAAGCAAATCTAATCGGAGAACGGAGAAATTTCGGTTGTGAAGAGACGA 60
|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 AACTTAGCTCATAAGCATATCTAATCGGAGCTCGGAGAAATTTCGGTTGTGAAGAGAAG- 59
Query 61 AAAGATGGGAAATTTGTTATGTTGTGTTCAAGTGGATCAATCAACGGTAGCGATAAAAGA 120
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 60 AAAGATGGGGAATTTGTTTTGTTGTGTGCAAGTGGATCAATCAACGGTAGCGATAAAGGA 119
Query 121 AACATTTGGGAAATTCGAAGAAGTTCTTGAGCCTGGTTGCCATTTTCTTCCATGGTGTCT 180
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 AACATTCGGGAAATTCGAAGATGTTCTTGAGCCTGGTTGCCATTTTCTTCCATGGTGTCT 179
Query 181 TGGTAGTCAAGTTGCTGGTTACCTCTCTCTAAGGGTTCAGCAACTAGACGTCCGTTGCGA 240
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 180 TGGTAGTCAAGTTGCTGGTTACCTCTCTCTAAGGGTTCAGCAATTGGACGTTCGTTGCGA 239
Query 241 GACCAAGACTAAGGACAATGTGTTTGTTAATGTTGTTGCATCGATTCAGTACCGTGCCTT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 GACAAAGACTAAGGACAATGTGTTTGTTAATGTTGTTGCATCGATTCAGTACCGTGCTTT 299
Query 301 AGCTAATAAGGCCAATGATGCCTACTACAAACTCAGCAACACAAGGAGTCAGATTCAAGC 360
|||||||||||| |||||||| |||||||| ||||| ||||||||| |||||||||||||
Sbjct 300 AGCTAATAAGGCAAATGATGCGTACTACAAGCTCAGTAACACAAGGGGTCAGATTCAAGC 359
Query 361 TTATGTGTTTGATGGTATTAGAGCAAGTGTCCCGAAGTTGCTTCTTGATGATGTCTTTGA 420
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TTATGTGTTTGATGTTATTAGAGCGAGTGTCCCGAAGTTGCTTCTTGATGATGTCTTTGA 419
Query 421 GCAGAAGAATGATATTGCTAAAGCTGTTGAAGAGGAGCTCGAGAAGGCTATGTCGGCTTA 480
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GCAGAAGAATGATATTGCGAAAGCTGTTGAAGAGGAGCTCGAGAAGGCAATGTCGGCTTA 479
Query 481 CGGTTATGAGATTGTGCAAACTCTCATTGTTGATATCGAGCCTGATGAACATGTTAAACG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 CGGTTATGAGATTGTGCAAACTCTCATTGTTGATATCGAGCCTGATGAACATGTCAAACG 539
Query 541 GGCCATGAACGAAATCAACGCTGCTGCAAGGATGAGATTGGCTGCAAACGAGAAGGCAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GGCCATGAACGAAATCAACGCTGCTGCAAGGATGAGATTGGCTGCAAACGAAAAGGCAGA 599
Query 601 GGCTGAGAAAATTCTGCAGATTAAGCGAGCTGAAGGTGAAGCTGAGTCCAAGTACCTCTC 660
||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 GGCAGAGAAAATCCTACAGATTAAGAGAGCTGAAGGTGAAGCTGAGTCCAAGTACCTCTC 659
Query 661 GGGTCTGGGTATCGCCCGTCAGAGGCAAGCGATTGTAGATGGATTACGCGACAGTGTTTT 720
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 660 TGGTCTTGGTATCGCCCGTCAGAGGCAGGCGATTGTCGATGGATTACGCGACAGTGTTTT 719
Query 721 GGGTTTCGCTGTGAATGTGCCTGGGACAACTGCTAAAGATGTGATGGACATGGTGCTTGT 780
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GGGTTTCGCTGTGAATGTCCCTGGGACAACTGCTAAAGATGTGATGGACATGGTGCTAGT 779
Query 781 TACACAGTACTTTGACACAATGAAGGAGATTGGTGCTAGCTCCAAGTCTTCTGCTGTGTT 840
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 780 TACACAGTACTTTGACACAATGAAGGAGATTGGTGCTAGCTCCAAGTCGTCTGCCGTGTT 839
Query 841 CATACCGCATGGACCAGGAGCTGTTCGCGATGTTGCTACTCAGATCAGAGATGGCCTTCT 900
|||||| |||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||
Sbjct 840 CATACCTCATGGACCAGGAGCGGTTCGTGATGTGGCTTCTCAGATTAGAGATGGCCTTCT 899
Query 901 TCAAGGCTCGTCCGCAAACCTTTCTTGAAGTGGATTGACTGATTATGTTCTCTTTTCTTT 960
||||||||||||||||||||| | |||||| ||| ||||||||||| |||||||||||
Sbjct 900 TCAAGGCTCGTCCGCAAACCTGT---GAAGTGAATTCACTGATTATGTCCTCTTTTCTTT 956
Query 961 -GACTATGGTGTGATGTGATTATCATCTCTTCTTTCTTTTGGATTATGTTCGAACTCttt 1019
|||||||||||||| | || ||| | |||||||||||||||||||||||||||||||||
Sbjct 957 TGACTATGGTGTGAT-T-ATCATC-T-TCTTCTTTCTTTTGGATTATGTTCGAACTCTTT 1012
Query 1020 ttttctttttttttcctt-ttt-tATTTCTAT 1049
| || || |||| | || ||| ||||| |||
Sbjct 1013 TGTT-TTGGTTTT-C-TTATTTCTATTTGTAT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5