BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496457
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62750.1 | Symbols: | unknown protein; Has 24942 Blast hits... 1002 0.0
> AT5G62750.1 | Symbols: | unknown protein; Has 24942 Blast hits
to 11726 proteins in 897 species: Archae - 48; Bacteria -
2086; Metazoa - 8361; Fungi - 2243; Plants - 1040; Viruses
- 210; Other Eukaryotes - 10954 (source: NCBI BLink). | chr5:25203449-25204117
REVERSE LENGTH=669
Length=669
Score = 1002 bits (542), Expect = 0.0
Identities = 634/676 (94%), Gaps = 16/676 (2%)
Strand=Plus/Plus
Query 1 TGTAAGAAAGTTTTCTAGATTTAAGCACTATCTAAGAAAGACAAAATCAAACCCAAATCT 60
||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 3 TGTAAGAAAGTTTTCTAGATTTAAGCACTATCTAAGAAAAACAAAAT------CAAA-CT 55
Query 61 CATAAAGAATAATGGGAGAAACAGAAGAGAAAGTGAAGAACCATGGTGATaacaaagaag 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 56 CATAAAGAATAATGGGAGAAACAGAAGAGAAAGTGAAGAACCA---TGATAACAAAGAAG 112
Query 121 aggaacacaacaaggctgagaaaactgagaagaaggagaagaagaaagataaagataaga 180
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 113 AGGAACACAACAAGGCTGAGAAAGCTGAGAAGAAGGAGAAGAAGAAGGATAAAGATAAGA 172
Query 181 aggataagaaCGAGGACGATAAAAATGGTGGAGgagaagaaggagaagatcaagagaaga 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 173 AGGATAAGAACGAGGACGATAAAAATGGTGGAGGAGAAGAAGGGGAAGATCAAGAGAAGA 232
Query 241 agagctagaagaaagataagaaggcgaagaaagaaaagaaccctgaagataagaaagatc 300
||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 233 AGAGCAAGAAGAAAGATAAGAAAGCGAAGAAAGAGAAGAACCCTGAAGATAAGAAAGATC 292
Query 301 cagagaaattgaagatgaagcttcagaagattgaagaaaagattcaagCTATGGTCTTAA 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CAGAGAAGTTGAAGATGAAGCTTCAGAAGATTGAAGAAAAGATTCAAGCTATGGTCTTAA 352
Query 361 AGAAAGATGAGATTGTGAAGCTTATTCATGAGGCTGAACAAGCTAAGCCTAGTACTGCTG 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 AGAAAGATGAGATTGTGAAGCTTATTCATGATGCTGAACAAGCTAAGCCTAGTACTGCTG 412
Query 421 CAGTAGATGCACCACCACCAACTAACTAATTCAAATACA-AA-TTATATGCTACCTTAAG 478
||||||||||||||||||||||||||||||||||||||| || |||||| |||| ||||
Sbjct 413 CAGTAGATGCACCACCACCAACTAACTAATTCAAATACACAAATTATATACTACAATAAG 472
Query 479 TTAACTAATATATATGCCAATTACAAATGCTGATGAATGTTATTTTCAGCGTATCTTGGC 538
||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||
Sbjct 473 TTAACTAATATATTTGTCAATAACAAATGCTGCTGAATGTTATTTTCAGCGTATCTTGGT 532
Query 539 ATAGGgtttttgttttgttttgtttgATTTCAATCAGAGTTTGCTTGTAAAATATGTGTT 598
||||| | |||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 533 ATAGG-TCTTTGTTTTGTTTTGTTTGATACCAATCAGAGTTTGCTTGTATACTATGTGTT 591
Query 599 -GTAAGTTGTACAAAAACTATCTGTTTTTAATATAATACTTTTCAGCTTAATACATATTG 657
|||| ||||||||||| | ||||||| |||||||||| ||||||||||||||||||||
Sbjct 592 TGTAAATTGTACAAAAAAAA-CTGTTTT-AATATAATACGTTTCAGCTTAATACATATTG 649
Query 658 GTAATGCTGATGTATA 673
||||||||||||||||
Sbjct 650 GTAATGCTGATGTATA 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5