BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496458
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62760.1 | Symbols: | P-loop containing nucleoside triphosp... 2811 0.0
> AT5G62760.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25204472-25209508
REVERSE LENGTH=2359
Length=2359
Score = 2811 bits (1522), Expect = 0.0
Identities = 1982/2182 (91%), Gaps = 120/2182 (5%)
Strand=Plus/Plus
Query 1 TGTTGATCGATTTCATCACATAAACCCTAATTTAGATTTCAGGGTTCATCTG--AA---- 54
|||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 24 TGTTCATCAATTTCATCACATAAACCCTAATTTAGATTTTAGGGTTCATCTGAAAACTCT 83
Query 55 --CAGT-CTT----GC-A--AAATCATCAACAATGGATAATAATTTCGACAACTATCATC 104
|| | || || | ||||||||||||||||||||||||| | | ||||||||||
Sbjct 84 TGCAATATTTACAAGCTATTAAATCATCAACAATGGATAATAATTACCAGAACTATCATC 143
Query 105 A-C--C---A-C-----CATCATCAACAATGGCGTCCAGCACCAACACAGCCAAACATAT 152
| | | | | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 144 ATCATCATAATCATAATCATCAACAACAATGGCGTCCAGCACCAACACAGCCAAACATAT 203
Query 153 GCCCGATTTGTACAGTGCCTCACTTCCCCTTTTGTCCACCGTAtcctcctccatcttctt 212
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 204 GCCCGATTTGTACAGTGCCTCACTTCCCTTTTTGCCCACCGTATCCTCCTCCATCTTCTT 263
Query 213 tccctcacaaccccaacttccctcctcctcctcctcctcacctcAATTCACCTCGTCCTG 272
|| || ||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 264 TCGCTTACAACCCCAACTT---TCCTCCTCCTCCTC---ACCTCAATTCACCTCGTCCTG 317
Query 273 GTTTCGATTCGTTCACCGGACCACCGGTTCCACCACCGCAAATTCACTTTCCGCCCTGGC 332
| |||||||| ||||||||||||||||||| ||||||||||| ||||| ||| || ||||
Sbjct 318 GATTCGATTCCTTCACCGGACCACCGGTTCGACCACCGCAAAATCACTATCCTCCGTGGC 377
Query 333 AACCTCACCACAGAAATCAATGGCGACCGGTTTCTTCTGACTATCGTAGCGCCGTTGATG 392
||||||||||| |||||||||||||||| ||| | | ||| | ||||
Sbjct 378 AACCTCACCACGGAAATCAATGGCGACCAGTT------G-C---CGT-------T-GATG 419
Query 393 TTGATAGGGAAGCTGATCGGAGCTATAAGCGAGCTCGGATTGATGCGATCGGTGGTGGTT 452
||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 420 TTGATAGGGAAGCTGATCGGAGCTATAAGAGAGCTCGGATTGATACGATCGCAGGTGGTT 479
Query 453 CTCCCGGTTACGGTGTTTC--A---T--G-G-----G-AT--------AA--TGAACGGA 488
|||| |||||||||||||| | | | | | || || |||||| |
Sbjct 480 CTCCGGGTTACGGTGTTTCTGAGAGTCCGAGTCCTCGGATCTCTTGGGAAAATGAACGAA 539
Query 489 GGTTGAAGATGGTTCGCGATCATGGTTATGGTTTAACTGCGCCGTCTCCAGGAGTGAATT 548
||||||||||||||||||||||||||||||||||| |||||||||| | | | | | |
Sbjct 540 GGTTGAAGATGGTTCGCGATCATGGTTATGGTTTAGCTGCGCCGTC-C-A--A-T-A-T- 591
Query 549 TAGAGATGAATCATCAGTATGGGAGTGAATTTAGGAATGGAGGTCAGTTTAATGCTGTAG 608
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 592 -AGAGATGAATCATCAGTATGGGAGTGAATTTAGGAATGGAGGTCAATTTAATGGTGTAG 650
Query 609 CTCCTC--C-TCCTC---------ATCATCCGCCGCTGTACGGAGGCTATTTTAGCGGTC 656
|||||| | ||||| |||||||||| | |||||| |||||||| ||||||
Sbjct 651 CTCCTCTTCCTCCTCCTCCGCCTCATCATCCGCCTCCGTACGGTGGCTATTTCAGCGGTT 710
Query 657 CTAATGGTCAGCCTCCTCTTCCGGTTTCACCACCACCGCCTTTGCCTCCATCTCATCCGC 716
|||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 711 CTAATGGTCAGCCTCCTCTTCCGGTTTCTCCACCACCGCCTTTGCCT---TC--ATC--- 762
Query 717 CGTCTCATCCTTCTTCCCTGTTTCCCGTCACTACTAATTCGTCACCAACGATCCCTCCAT 776
|| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 763 --TC--ATCCTTCTTCCTTGTTTCCTGTCACTACTAATTCGTCACCAACGATCCCTCCGT 818
Query 777 CATCATCAT-TACCTCAAATGCCTAATGCTTCTCCATCTTCTGCACAATTAGCACCTACT 835
||||||||| | ||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 819 CATCATCATAT-CCTCAGATGCCTAATGCTTCTCCATCTTCTGCACAACTAGCACCAACT 877
Query 836 CGGTCTAAAGTGATTGATGTGTCCCATTTGCTGAAGCCTCCTCATCGATCTACTCGTCCA 895
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 878 CGGTCTAAAGTGATTGATGTGTCTCATTTGCTGAAGCCACCTCATCGATCTACTCGTCCA 937
Query 896 GATCACTTTGTAATTATCCTTCGAGGGCTACCAGGCAGTGGGAAGAGTTATTTAGCCAAG 955
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 938 GATCACTTTGTAATTATTCTTCGAGGGCTACCAGGTAGTGGGAAGAGTTATTTAGCCAAG 997
Query 956 TTGTTGCGTGACATCGAGGTAGAAAACGGTGGTAGTGCTCCACGAATCCATTCTATGGAT 1015
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 998 TTGTTGCGTGACGTCGAGGTAGAAAATGGTGGTAGTGCTCCACGAATCCATTCTATGGAT 1057
Query 1016 GATTACTTCATGACTGAAGTTGAGAAGGTTGAGGAGAGTGATTCAACTTCTTCAAGCTCT 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1058 GATTACTTCATGACTGAAGTTGAGAAGGTTGAGGAGAGTGATTCAACTTCTTTAAGCTCT 1117
Query 1076 GGTAGAAGCAAAAGACCTAATGTGAAGACGGTCATGGAATACTGCTACGAACCTGAGATG 1135
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GGTAGAAGCAAAAGACCTATTGTGAAGACGGTCATGGAATACTGCTACGAACCTGAGATG 1177
Query 1136 GAAGAGGCTTATCGTTCAAGCATGCTGAAAGCTTTTAAGAGGACACTTGAAGATGGAGCC 1195
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1178 GAAGAGGCGTATCGTTCAAGCATGTTGAAAGCTTTTAAGAGGACACTTGAAGATGGGGCT 1237
Query 1196 TTCAGCTTTGTAATCGTTTGTTTTCTGGAATTGACCGTTTCTTGCTGGTATATGTCACTC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TTCAGCTTTGTAATCGTTTGTTTTCTGGAATTGACCGTTTCTTGCTGGTATATGTCACTC 1297
Query 1256 ATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTACTCAGTTTTGGGCAACAGCA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 ATCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTACTCAGTTTTGGGCAACAGCA 1357
Query 1316 AAGAGATCTGGATATGAAGCTTACATATTGGAAGCAACATACAAGGACCCGACTGGCTGT 1375
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1358 AAGAGATCTGGATATGAAGCTTACATATTGGAAGCAACATACAAGGACCCAACTGGCTGT 1417
Query 1376 GCTGCAAGAAACGTACATGGCATCACACTAGATCAAGTACAGCAGATGGCAGAACAATGG 1435
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1418 GCTGCAAGAAACGTACATGGCATCACAGTAGATCAAGTACAGCAGATGGCAGAACAATGG 1477
Query 1436 GAAGAAGCTCCATCATTGTACATGCAGCTGGATATCAAGTCCTTTACGCGGTGGGATGAT 1495
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1478 GAAGAAGCTCCTTCATTGTACATGCAGCTTGATATCAAGTCTTTTACGCGGTGGGATGAC 1537
Query 1496 CTGAAGGAGAATGGAATCCAGGAGGTGGATATGGACATGGAAGATGATTTCGGACTGCCA 1555
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 CTGAAGGAGAATGAAATCCAGGAGGTGGATATGGACATGGAAGATGATTTCGGACTGCCA 1597
Query 1556 GAAAGAAAATCCGATAACAGTACCCAGTCAGAAGAAAAGGGTGCGACATTGGGCTCTTAC 1615
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1598 GAAAGAAAATCCGATAACAGTACCCAGTCAGAAGAAAAGGGTGCGACAGAGGGCTCTTAC 1657
Query 1616 AAAAGTGAGAGTAAATGGGAAGCAGAATCTGGCTCCCGTACAGAAGAAGTGAAAGAACTA 1675
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1658 AAAAGTGAGAGTAAATGGGATGCAGAATCTGGCTCCCGTACAGAAGAAGTGAAAGAACTA 1717
Query 1676 AGCAGAAGTAAATGGTCAAATGTAGAAGAAGATGAAACAGAGAACTCTCAGAGCGTGAGA 1735
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1718 AGCAGAAGTAAATGGTCAAATGTAGAGGAAGATGAAACAGAGAACTCTCAGAGCATGAGA 1777
Query 1736 CGAAACTCCAAATCTCTTCCCAAATCAAGCCA-G--CG---G---AAAGGCAAATCTGTT 1786
|||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct 1778 CGAAACTCCAAATCTCTTCCCAAATCAAGCCAAGAACGCCAGCGGAAAGGCAAATCTGTT 1837
Query 1787 TGGTGGGGCGATAAGGGTGGAGATGCGGGTTTTTCAATTGGTGCTGCAAGGAATATGAAC 1846
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1838 TGGTGGGGCGATAAGGGTGGAGACGCGGGGTTTTCAATTGGTGCTGCAAGGAATATGAAC 1897
Query 1847 ATGCCATCCTTAGTTATAGGTCCAGGATCAGGATACAACTTGAAATCGAATCCTCTATCG 1906
|||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1898 ATGCCATCCTTAATTATAGGTCCAGGATCAGGATACAACGTGAAATCAAATCCTCTATCG 1957
Query 1907 GAAGAAGAGAGTCGTGCACTCGCTGATGCAATTGGGAAAGCAAAGGTAAGAGGAATTTTC 1966
| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1958 GCAGAAGAGAGTCGTGCACTAGCTGATGCAATTGGAAAAGCAAAGGTAAGAGGAATTTTC 2017
Query 1967 CAGGATCAGCTTAGAGCAGAGCGTGAGTCTTTCAAAGCTGCTTTTGACAAGAGACATGTA 2026
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2018 CAGGATCAGCTTAGAGCAGAGCGTGAGTCTTTCAAAGCTGTTTTTGACAAGAGACATGTA 2077
Query 2027 TGAATCGTTACAAAGGATAAGTAAGTGTATGATTTTCTCTGGGTAATCAAAATTTATTTT 2086
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2078 CGAATCGTTACAAAGGATAAGTAAGTGTATGATTTTCTCCGGGTAATCAAAATTTATTTT 2137
Query 2087 GCCTGATCCATGAGAATCATCA 2108
|||||||||| |||||| ||||
Sbjct 2138 GCCTGATCCACGAGAATTATCA 2159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104517534690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5