BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496460
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62770.1 | Symbols: | Protein of unknown function (DUF1645)... 1323 0.0
> AT5G62770.1 | Symbols: | Protein of unknown function (DUF1645)
| chr5:25210495-25211607 FORWARD LENGTH=1113
Length=1113
Score = 1323 bits (716), Expect = 0.0
Identities = 991/1112 (89%), Gaps = 65/1112 (6%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCAAACGTTTCAGTTTCAGAAAAGAGAAAACTGAGAGGCAAGAAACAACTTT 60
|||||||| ||||||||||||||||||||| || | | | | | |||||||||||||
Sbjct 10 TCTCTCTCAAAAACGTTTCAGTTTCAGAAAACAG--AGC--A-A-G-AAGAAACAACTTT 62
Query 61 CTCTCAAATGCAGACGAGTCGGTTACTCTCCTTTTCCTCTAACTCTCCGAGCTTTGGCAG 120
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 63 CTCTCAAATGCAGACGAGTCGGTTACTCTCCTTCTCCTCTAACTCTCCGAGTTTTGGCAG 122
Query 121 CTTCTCCTCCGCCGTAGACCTCGCCGCAATCGCCGCCCGAGTCGTCGAAGAATTCAGAGA 180
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 123 CTTCTCCTCCGCCGTTGACCTCGCTGCAATCGCCGCTCGAGTCGTCGAAGAATTCAGAGA 182
Query 181 TCAGGAGCAGACACAACCCGA--C-TCTCACCACCGCGACGACGATAATGATTCCGATTT 237
||| || || |||||| |||| | |||| ||||||||||||||||||||||||||| ||
Sbjct 183 TCACGACCAAACACAATCCGATTCTTCTCCCCACCGCGACGACGATAATGATTCCGACTT 242
Query 238 CGCTTTCGATTGTCCAAGCAACACGTGTTCTCAACCTCTCGCTACCGCCGACGAGATTTT 297
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 243 CGCTTTCGACTGTCCAAGCAACACGTGTTCTCAGCCTCTCGCTACCGCCGACGAGATTTT 302
Query 298 CTGTAACGGTCAGATCCGTCCGTTGAATCCGTACGGTGGCGGAATCGGAAATGCTCCTGT 357
||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 303 CTGTAACGGTCAGATCCGTCCGTTGAATCCGTA------CGG--T-GGAAATGCTCCGGT 353
Query 358 AGAATCTCAA-C--C--G--AG--TACTACTC-TCCTCCCTCGTCGTCATAGACCGGCGT 407
||||||||| | | | || |||||||| |||| |||||||||| |||||||||||
Sbjct 354 GGAATCTCAACCGACGAGTAAGATTACTACTCTTCCT-CCTCGTCGTCGTAGACCGGCGT 412
Query 408 TGAGAAAACTGATGAGCGAGGATCGAGATCCGACTTCGAATTCTTTTTCGGAAGCTGAAG 467
|||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 413 TGAGGAAACTGATGAGCGAGGATCGAGATCCGGCTTCGAATTCTTCGTCGGAAGCTGAAG 472
Query 468 AGGATCTAACCGGAGTTCCGCCGGAGACGTACTGTGTATGGAAACCAAAACAATCGAATT 527
||||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 473 AGGATCTTACTGGTGTTCCTCCGGAGACGTACTGTGTATGGAAACCTAAACAATCGAATT 532
Query 528 CCAGAGATGATGATCTTCAAGGTCTCTCGTCTTCTCCGTCACGA-AGCAAAATCAAAAGC 586
|| ||||||||||||||||| | || |||||||||||||||| | |||||||||||||||
Sbjct 533 CCGGAGATGATGATCTTCAAAGACTTTCGTCTTCTCCGTCAC-ACAGCAAAATCAAAAGC 591
Query 587 CATTCAGCTGGATTCTCGAAACGTTGGAATCTCCGGAATCTTCTGTACGTTAGAAGCAGC 646
||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 592 CATTCAGCTGGGTTTTCGAAACGTTGGAAGCTCCGGAATCTTCTGTACGTTAGAAGCAGT 651
Query 647 AGCGAAGGAAACGATAAGCTCGTGTTTCCGGCGCCGGTTAAGAAGAACGACGAGACTGTG 706
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 652 AGTGAAGGAAACGATAAGCTCGTCTTTCCGGCGCCGGTTAAGAAGAACGACGAGACGGTC 711
Query 707 TCCGATCAGGAACCGCCGTCCAAGGAGGAA--G--G--AAA--TGG-CGGCGAGGAAGAA 757
|||||||| || | | ||| ||||| | | ||| ||| ||| |||||||||
Sbjct 712 TCCGATCA--AAGAGAAG---AAG-AGGAACCGCCGTCAAAGGTGGACGGAGAGGAAGAA 765
Query 758 GAAAGGGAAAGGGAAGAGACAAAACGACAGACGTATGTGCCGTATAGAAAGGATATGATT 817
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GGAAGGGAAAGGGAAGAGACAAAACGACAGACGTATGTGCCGTATAGAAAGGATATGATT 825
Query 818 GGAATATTAAAAAATGTGAATGGGCTAAGTCGTCATTTACGTCCTTTTTGATGGTGACGT 877
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GGAATATTGAAAAATGTGAATGGGCTAAGTCGTCATTTACGTCCTTTTTGATGGTGACGT 885
Query 878 GGCTCTCC-AAGACGCGGATTTTGGGTGGGCTTCGGtttctttctttttcctactttttt 936
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GGCTCTCAGAAGACGCGGACTTTGGGTGGGCTTCGGTTTCTTTCTTTTTCCTACTTTTTT 945
Query 937 t-ttt-c-ttttttacttttatttagtttCCGAGAAAATCTTGAGTGTTGGCGAGAAAGT 993
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TCTTTTCCTTTTTTACTTTTATTTAGTTTCCGAGAAAATCTTGAGTGTTGGCGAGAAAGT 1005
Query 994 AAATAATTTTATTTTCGAATATTTTTAAA-TA--G----ATAATGTA--TAA-GT-T--G 1040
||||||||| |||||||||||||||||| | | |||| || ||| || | |
Sbjct 1006 AAATAATTT-ATTTTCGAATATTTTTAATGTCTCGGTTTATAAAATAGATAATGTATAAG 1064
Query 1041 TTTTGGTGGTTTGATTATTGGAATGGAGGAGA 1072
||||||| |||||||||||||||||||||||
Sbjct 1065 TTTTGGTTATTTGATTATTGGAATGGAGGAGA 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5