BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496466

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62830.1 | Symbols:  | F-box associated ubiquitination effec...   754    0.0  


> AT5G62830.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr5:25226168-25226782 REVERSE LENGTH=615
Length=615

 Score =  754 bits (408),  Expect = 0.0
 Identities = 484/520 (93%), Gaps = 7/520 (1%)
 Strand=Plus/Plus

Query  14   TGGAAATTTATGAGTTTACCTCTAATTCATGGAGGAATCTTGATGCGATCATTCCCGATC  73
            ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  2    TGGAAATGTATGAGTTTACCTCTAATTCATGGAGGAATCTTGATGTGATCATTCCCGATC  61

Query  74   AGGCCTACTTAAAAAGTGATGGCCATGCGTGTGCGTCTTTAAGTGGAAATACTTATTGGG  133
            |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  62   AGGCCTACTTAAAATGTGATGGTCATGCGTGTGCGTCTTTAAGTGGAAATACTTATTGGG  121

Query  134  TGTCGTGGATTAAAAAAGGAGACAACGACGACTACTCACTACTCAGTTTTGATTTTTCAA  193
            |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  TGTCATGGATTGAAAAAGGAGACAACGACGACTACTCACTACTCAGTTTTGATTTTTCAA  181

Query  194  CAGAAAGGTTTCAACGTTTGTGTGCTCCCTTTCATCATCAACCATGCCGTGTTGATACTA  253
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  182  CAGAAAGGTTTCAACGTTTGTGTGCTCACTTTCATCATCAACCATGCCGTGTTGATACTA  241

Query  254  TGGCTCTCTCGGTTGTTAGAGAAGAACATCTTTCCTTGTTTTATCAGAGTAGACAGACAC  313
            | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  242  TTGCTCTCTCGGTTGTTAGAGAAGAACATCTTTCCTTGTTTTATCAGAGTAGGCAGACAC  301

Query  314  TAAAAGTGGAAATATGGATGACCGATGAGATTCATACAACATTTGTGTCGTGGAGCAAGT  373
            |||| |||||||||||| |||||| ||||||| | || |||||||| |||||||||||||
Sbjct  302  TAAAGGTGGAAATATGGGTGACCGTTGAGATTGAGACCACATTTGTCTCGTGGAGCAAGT  361

Query  374  TCTTAACATTAGATTTAGTTTCTCCTTCTTTTTCGA-ATTCCATGAGCTTCTATATTGTT  432
            ||||||||||||||||||||||||||| ||| |||| || | ||||||||||||||| ||
Sbjct  362  TCTTAACATTAGATTTAGTTTCTCCTTGTTTATCGAGAT-CAATGAGCTTCTATATTCTT  420

Query  433  GACGAGGAGAAGAAAGTTGTTGTGTGTTGTG-TGGAAGACGGAT-TTT-T-CGACTCCAA  488
            || |||||||||||| ||||||||||||||| || ||| || |  ||| | | |||||||
Sbjct  421  GATGAGGAGAAGAAAATTGTTGTGTGTTGTGATGAAAG-CGAAAATTTCTACTACTCCAA  479

Query  489  ATTGGTATGGATTGTTAGAGAAGGAGAAGAATATATACCA  528
            |||||||||||||| |||||||||| ||||||||| ||||
Sbjct  480  ATTGGTATGGATTGCTAGAGAAGGACAAGAATATAGACCA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5