BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496468
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62850.1 | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 ... 1426 0.0
> AT5G62850.1 | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3
family protein | chr5:25229938-25231527 REVERSE LENGTH=989
Length=989
Score = 1426 bits (772), Expect = 0.0
Identities = 837/869 (96%), Gaps = 1/869 (0%)
Strand=Plus/Plus
Query 1 ATGACGGACCCCCACACTGCCCGGACGATCGTCGGAATCATCGGAAACGTGATTTCTTTC 60
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGACGGACCCCCACACCGCCCGGACGATCGTCGGAATCGTTGGAAACGTGATTTCTTTC 60
Query 61 GGCTTGTTCTGCGCTCCAATACCAACGATTATGAAGATATGGAAGATGAAATCGGTGTCG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 GGCTTGTTCTGCGCTCCAATACCAACGATGGTGAAGATATGGAAGATGAAATCGGTCTCC 120
Query 121 GAGTTTAAGCCAGATCCATACGTCGCTACAGTTTTAAACTGCATGATGTGGACATTTTAC 180
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 GAGTTTAAGCCAGATCCATACGTAGCTACGGTTTTAAACTGCATGATGTGGACATTTTAC 180
Query 181 GGACTTCCTTTCGTCCAGCCCGACAGTCTCCTCGTCATCACCATTAATGGAACTGGTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGACTTCCTTTCGTCCAGCCCGACAGTCTCCTCGTCATCACCATTAATGGAACTGGTCTT 240
Query 241 TTCATGGAACTCGTTTACGTCACCATCTTCTTTGTCTTCGCTACCTCCCCTGTCCGCAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATGGAACTCGTTTACGTCACCATCTTCTTTGTCTTCGCTACCTCCCCTGTCCGCAGA 300
Query 301 AAGATCACAATAGCTATGGTAATCGAGGTGATATTCATGGCGGTGGTGATCTTCTGCACA 360
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 301 AAGATCACAATAGCTATGGTTATCGAGGTAATATTCATGGCGGTGGTGATCTTCTGCACA 360
Query 361 ATGTATTTTTTGCATACAACAAAGCAGAGATCTATGCTTATTGGGATCTTGTGCATTGTT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 ATGTATTTTTTGCATACAACAAAGCAGAGATCAATGCTTATTGGGATCTTGTGCATTGTT 420
Query 421 TTCAACGTCATCATGTATGCTGCTCCTCTCACCGTCATGAAACTTGTGATAAAGACAAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAACGTCATCATGTATGCTGCTCCTCTCACCGTCATGAAACTTGTGATAAAGACAAAG 480
Query 481 AGCGTGAAATACATGCCGTTCTTCCTGTCATTAGCCAACTTCATGAACGGTGTCGTTTGG 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGCGTGAAATACATGCCGTTCTTCCTATCATTAGCCAACTTCATGAACGGTGTCGTTTGG 540
Query 541 GTCATTTATGCATGTCTTAAATTCGACCCCTATATTTTGATTCCAAATGGTCTTGGATCG 600
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 541 GTCATTTATGCATGTCTTAAATTTGACCCTTATATTTTGATTCCAAATGGTCTTGGATCG 600
Query 601 CTATCAGGAATAATCCAGCTTATATTATACATAACTTACTATAAAACAACTAATTGGAAC 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 601 CTATCAGGAATAATCCAGCTTATAATATACATAACTTACTATAAAACAACTAACTGGAAC 660
Query 661 GATGAAGATGAAGATAACGAAAAGCGCTATTCGAATGCTGGAATCGAACTTGGCCAGGCT 720
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATGACGATGAAGATAAAGAAAAGCGCTATTCGAATGCTGGAATCGAACTTGGCCAGGCT 720
Query 721 TGATAATTGCAGCTAGCTTCATCGTCGACGGTGCTTCATCGATAGGTTAAGATAGAATCA 780
||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TGATAGTTTCAGCTAT-TTCATCGTCTACGGTGCTTCATCGATAGGTTAAGATAGAATCA 779
Query 781 GAAGTGAGGTGAAGTTCTTATTACTATTATTATGTGGAAGCTTATGAAGaaaaaaaatga 840
||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||||
Sbjct 780 GAAGTGAGGTGAAGTTCTTATTACTATTATTTTGTGTAAGCCTATGTAGAAAAAAAATGA 839
Query 841 aaaaGTGGAACCCCAAAGTTACGAAGttt 869
| ||||||||||| |||||| |||||||
Sbjct 840 ACAAGTGGAACCCTTAAGTTATGAAGTTT 868
Score = 148 bits (80), Expect = 7e-35
Identities = 91/96 (95%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 865 AGtttttttttGTTGG-AATGATTATAACTTTCGCAAGTTGAATCTATGTAATTTGTTAC 923
||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 894 AGTTTTTTTTT-TTGGAAATGATTGTAACTTTCGCAAGTTGAATCTATGTACGTTGTTAC 952
Query 924 AATTTTAGTTTTAATCGAAGTTTATTAGATTACTTT 959
||||||||||||||||||||||||||||||||||||
Sbjct 953 AATTTTAGTTTTAATCGAAGTTTATTAGATTACTTT 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5