BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496469
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62865.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 721 0.0
AT5G62860.1 | Symbols: | F-box associated ubiquitination effec... 302 6e-81
> AT5G62865.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48020.1).
| chr5:25234064-25234849 FORWARD LENGTH=786
Length=786
Score = 721 bits (390), Expect = 0.0
Identities = 462/494 (94%), Gaps = 15/494 (3%)
Strand=Plus/Plus
Query 605 CGCAGTCGGACCCAACCCGAGATCCGGATACCCGGTACGATCAACGTTGCTGCTGTTTCC 664
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 11 CGCAGTCGGACCCAACCCGAGATCCTGATACCCGGTACGATCAACGTTGCTGTTGTTTCC 70
Query 665 CCAGCTT---CCGATCAAGAAGCTCCACCGCCGTTGG--A-------TGGGGACGAATTC 712
||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 71 CCAGCTTCCGCCGATCAAGAAGCTCCACCGCCGTTGGTTACTCCTCCTGGGGACGAATTC 130
Query 713 GAACCGTCGATGACAGTAATCACAGCGGCGACCACGGCGACGAGCCACGGTGGTGGATCC 772
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 131 GAACCGTCGATGACAGTAATCACAGCGGCGACCACGGCGACGAGCCACGTTGGTGGATCC 190
Query 773 GAGCATCCTTGAAGATCCGAGAGTGGTCAGAAATCGTAGCTGGTCCACGGTGGAAGACTT 832
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 191 GAGCATCCTTGAAGATCCGAGAGTGGTCAGAAATCGTTGCTGGTCCACGGTGGAAGACTT 250
Query 833 TCATACGGCGATTCAATCGCGATCCTCGACGCGGCCGCGATTGGGACGCAAGCGAGAAGT 892
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 251 TCATTCGTCGATTCAATCGCGATCCACGACGCGGCCGCGATTGGGACGCAAGCGAGAAGT 310
Query 893 TTCAATACGATCCTTTGAGTTACTCTTTGAACTTCGATGACGATGACGAGGA---TGAAT 949
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 311 TTCAATACGATCCTTTGAGTTACTCTTTGAACTTCGATGACGACGACGAGGAGGATGAAT 370
Query 950 ACGTCGGAGTAGGTGGATTGCGAAGCTTCTCCACTCGATTCGCTTCTGTTCCGGTATACT 1009
|||||||| |||||||||| ||||||||||| || |||||||||||||| ||||| ||||
Sbjct 371 ACGTCGGACTAGGTGGATTACGAAGCTTCTCGACCCGATTCGCTTCTGTCCCGGTTTACT 430
Query 1010 CAGGTAAAGCTCCGGCGATTTCGCCGACATCTTTGTCTGCGTTGACGCCGCGTAATGAGA 1069
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 431 CAGGTAAAGCTCCGGCGATTTCGCCGACGTCGTTGTCTGCGTTGACGCCGCGTAATGAGA 490
Query 1070 TAATTGAAAGTTAG 1083
| ||||||||||||
Sbjct 491 TCATTGAAAGTTAG 504
> AT5G62860.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:25232632-25233541 FORWARD LENGTH=657
Length=657
Score = 302 bits (163), Expect = 6e-81
Identities = 204/223 (91%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAGAGGACGCCAAGAGAAGAAGAGCTCACGATCTCC-AAA--ACGACAAC-A--T 54
|||||||||||||||||||||||||||| |||||||||||| ||| |||||||| | |
Sbjct 1 ATGAAGAGAGGACGCCAAGAGAAGAAGACCTCACGATCTCCAAAACGACGACAACAACGT 60
Query 55 TACAGCAAAATCTCCGACATAGAAAAGTCAAACGGTATCCATATCCCTTTCGATTTAATA 114
| | | |||||||||| | |||||| ||||||||||| ||||||||||||||| |||||
Sbjct 61 CAGAACGAAATCTCCGAGAGAGAAAATTCAAACGGTATACATATCCCTTTCGATGTAATA 120
Query 115 ACCGATATACTCTCGAGACTCCCTGTTAAGTCACTTGTAAAATACGATAGATGGAGCAAC 174
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 ACCGATATACTCTCGAGACTCCCTGTTAAGTCACTTGTAAAACACGATAGATGGAGCAAC 180
Query 175 TCGTGTGATGGATTGTTCGGGTATGATCCAGTCGAGAAACAAG 217
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 181 TCGTGTGATGGATTGTTCGGATATGATCCAGTTGAGAAACAAG 223
Score = 219 bits (118), Expect = 6e-56
Identities = 136/145 (94%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 313 AGTGAAGTGAGTTTCGATGAATTGTCTTTGGTAAACTACCAAGGGAAATTAGGATGCATA 372
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 466 AGTGAAGTGAGTTTCGATGAATTGACTTTGGTAAACTACCAAGGAAAATTAGGATGCATA 525
Query 373 CGATACACCAAAGCTAGTGCAGAGATGTGGAATATGGAAGATCATATAGAGAAACAAGAA 432
|| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 526 CGTTACACCAAAGCTAGTGCAGAGATGTGGATTATGGAAGATCATATTGAGCAACAAGAA 585
Query 433 TGGTCTAAGATTATTATATTTAAGA 457
||||||||||| || |||||| |||
Sbjct 586 TGGTCTAAGATGATGATATTTGAGA 610
Score = 78.7 bits (42), Expect = 1e-13
Identities = 53/58 (91%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 214 CAA-GGAGGAACCTTGACTTACAAGGCATTTGGAATCACTCTCCAGAAGCAAGGAGTA 270
||| |||||| ||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 256 CAATGGAGGAGCCTTGACATCCAAGGCATTTGGAATCACTCTCCAGAAGCTAGGAGTA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5