BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496470
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62880.1 | Symbols: ARAC10, ATRAC10, ATROP11, RAC10 | RAC-li... 1391 0.0
AT3G48040.1 | Symbols: ARAC8, ATROP10, ROP10, ATRAC8 | RHO-rela... 706 0.0
AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-... 274 1e-72
AT3G48058.1 | Symbols: | pseudogene of Rac-like GTP-binding pr... 128 9e-29
> AT5G62880.1 | Symbols: ARAC10, ATRAC10, ATROP11, RAC10 | RAC-like
10 | chr5:25237134-25239174 FORWARD LENGTH=985
Length=985
Score = 1391 bits (753), Expect = 0.0
Identities = 860/907 (95%), Gaps = 26/907 (3%)
Strand=Plus/Plus
Query 41 TTTTGAGATCAAAATGGCATCAAGTGCTTCAAAGTTCATCAAATGTGTGACTGTTGGTGA 100
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 90 TTTTGAGATCAAAATGGCTTCAAGTGCTTCAAAGTTCATCAAGTGTGTGACTGTTGGTGA 149
Query 101 TGGTGCCGTTGGTAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGA 160
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TGGTGCTGTTGGTAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGA 209
Query 161 CTACATACCAACAGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGT 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CTACATACCAACAGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGT 269
Query 221 CAATTTAGGGCTTTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAG 280
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 CAATTTGGGGCTTTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAG 329
Query 281 TTACAGAGGAGCAGATGTTTTCGTCTTGTCTTTCTCATTAGTCAGCCGAGCTAGCTACGA 340
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TTACAGGGGAGCAGATGTTTTCGTCTTGTCTTTCTCATTAGTCAGCCGAGCTAGCTACGA 389
Query 341 GAATGTTTTTAAAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCCTAGT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 390 GAATGTTTTTAAAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCCTTGT 449
Query 401 CCTTGTCGGTACCAAATTAGATCTTCGTGAAGATAAGCATTATTTGGCTGACCATCCTGG 460
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 450 CCTTGTTGGTACCAAATTAGATCTTCGTGAAGATAAGCATTATTTGGCTGATCATCCTGG 509
Query 461 ACTATCCCCTGTAACTACTGCACAGGGAGAGGAATTGCGTAAGCTAATTGGCGCGACGTA 520
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 510 ACTATCCCCTGTAACTACTGCACAGGGAGAGGAGTTGCGTAAGCTAATTGGTGCGACGTA 569
Query 521 TTACATTGAGTGTAGCTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCCGCAAT 580
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 570 TTACATTGAGTGTAGTTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCTGCGAT 629
Query 581 AAAGGAAGTGATCAAACCGCTGGTTAAACAAAAGGagaagacgaagaagaagaagaagCA 640
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 630 AAAGGAAGTGATCAAACCTCTGGTTAAACAAAAGGAGAAGACTAAGAAGAAGAAGAAGCA 689
Query 641 AAAGTCGAATCACGGCTGTTTGTCAAATGTTCTGTGTGGGAGGATAGTGACTCGGCATTG 700
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 690 AAAGTCGAATCACGGCTGTTTATCAAATGTTCTGTGTGGGAGGATAGTGACTCGGCATTG 749
Query 701 ATGATGATGATGACCCAACTCAGTCTGATGATTTAAAACTCCACTTTTGAGATT-T-TG- 757
|||| ||||| ||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 750 ATGACGATGA---CCCAACTCAGTCTGATGATTTTAAACTCCACTTTTGAGATTGTGTGA 806
Query 758 T----G------TT-ATATTATATAGATTGAATCATGTAAGAGATTATTAGCCTCTAATC 806
| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TAAACGAGAGACTTTATATTATATAGATTGAATCATGTAAGAGATTATTAGCCTCTAATC 866
Query 807 AATCAATAGTTACCTTGAagagagaaagagagtgagagagggaggtagagagCTTATTAT 866
|||||||||||||||||||||||||||||| | | | |||| |||||||||||||||
Sbjct 867 AATCAATAGTTACCTTGAAGAGAGAAAGAG-G-G-G-GAGG----TAGAGAGCTTATTAT 918
Query 867 TAATTCAATTATGTTTATTTGTTTCAAACCTGTTATTGCAATATATTTAGCTATTTTGAT 926
|||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 919 TAATTCAATTGTGTTTATTTGTTTCAAACCTGTTATTGCAATATATT-AGCCATTTTGAT 977
Query 927 GCAACAG 933
||||||
Sbjct 978 ACAACAG 984
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 ACTCCTCTTTTCAAGTAATCTCACTTCATTTATCTCTCTCT 41
||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ACTCCTCTTTTTAAGTAATCTCACTTCATTTATCTCTCTCT 41
> AT3G48040.1 | Symbols: ARAC8, ATROP10, ROP10, ATRAC8 | RHO-related
protein from plants 10 | chr3:17731480-17733492 FORWARD
LENGTH=959
Length=959
Score = 706 bits (382), Expect = 0.0
Identities = 523/590 (89%), Gaps = 14/590 (2%)
Strand=Plus/Plus
Query 53 AATGGCATCAAGTGCTTCAAAGTTCATCAAATGTGTGACTGTTGGTGATGGTGCCGTTGG 112
|||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 81 AATGGCTTCGAGTGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTGG 140
Query 113 TAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGACTACATACCAAC 172
||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 141 AAAAACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAAC 200
Query 173 AGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGTCAATTTAGGGCT 232
|||||||||||||||||||| |||||||| |||||||||| |||||| || ||||| ||
Sbjct 201 AGTTTTTGACAACTTTAGTGTTAATGTTGTGGTTGAAGGCATCACTGTGAACTTAGGCCT 260
Query 233 TTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAGTTACAGAGGAGC 292
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 261 TTGGGACACTGCCGGGCAAGAAGACTATAACAGACTAAGGCCTTTAAGTTACAGAGGAGC 320
Query 293 AGATGTTTTCGTCTTGTCTTTCTCATT-AGTCAGCCGAGCTAGCTACGAGAATGTTTTTA 351
||||||||| || ||| |||||||||| | |||||||||||||||| |||||||| ||||
Sbjct 321 AGATGTTTTTGTGTTGGCTTTCTCATTGA-TCAGCCGAGCTAGCTATGAGAATGTGTTTA 379
Query 352 AAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCC-TAGTCCTTGTCGGT 410
||||||||||||||||||||||||||||||| |||||||| |||| | || ||||| |||
Sbjct 380 AAAAGTGGATCCCTGAACTCCAACACTTTGCACCAGGAGT-CCCCATTGTGCTTGTTGGT 438
Query 411 ACCAAATTAGATCTTCGTGAAGATA-AGCATTATTTGGCTGACCATCCTGGACTATCCCC 469
|||||| | |||||||||||||||| | ||||| ||| |||| ||||||||||| |||||
Sbjct 439 ACCAAAATGGATCTTCGTGAAGATAGA-CATTACTTGTCTGATCATCCTGGACTGTCCCC 497
Query 470 TGTAACTAC-TGCACAGGGAGAGGAATTGCGTAAGC-TAATTGGCGCGACGTATTACATT 527
|||||||| | |||||||||||||| | || |||| || | || ||||| |||||||||
Sbjct 498 GGTAACTACAT-CACAGGGAGAGGAACTCCGCAAGCATA-TCGGAGCGACTTATTACATT 555
Query 528 GAGTGTAGCTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCCGCAAT-AAAGGA 586
|| |||||||||||||||||||||||||||||||| || |||||| | || || |||| |
Sbjct 556 GAATGTAGCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATTAAAGTA 615
Query 587 AGTGATCAAACC-GCTGGTTAAACAAAAGGagaagacgaagaagaagaag 635
|| || ||||| || | | |||||||||||||||| ||||||| |||||
Sbjct 616 -GTAATTAAACCAGCAG-TGAAACAAAAGGAGAAGAAGAAGAAGCAGAAG 663
> AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-like
3 | chr4:16672935-16674771 FORWARD LENGTH=1069
Length=1069
Score = 274 bits (148), Expect = 1e-72
Identities = 415/540 (77%), Gaps = 34/540 (6%)
Strand=Plus/Plus
Query 63 AGTGCTTCAAAGTTCATCAAATGTGTGACTGTTGGTGATGGTGCCGTTGGTAAA-ACCTG 121
|||||||||| ||| ||||| ||||| ||||| || || ||||| ||||| ||| || ||
Sbjct 245 AGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGG-AAAGACTTG 303
Query 122 TATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGACTACATACCAACAGTTTTTGA 181
| | ||||||| |||||| ||||| | |||||||| || || | ||||| || || ||
Sbjct 304 TCTTCTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTTCGA 363
Query 182 CAACTTT-AGTGCAAATGTTG-TTGTTGAAGGCACCACTGTCAATTTAGGGCTT-TGGGA 238
|| ||| ||||| |||| || ||||||| |||| |||| |||| || ||| || |||||
Sbjct 364 TAA-TTTCAGTGCCAATG-TGATTGTTGATGGCAACACTATCAACTT-GGGATTGTGGGA 420
Query 239 CACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAGTTA-CAGAGGAGCAGATG 297
||||| |||||||| ||||| || ||| |||| ||||| || || | | || |||||||
Sbjct 421 TACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATC-GCGGTGCAGATG 479
Query 298 TTTTCGT-CTTGTCTTTCTCA-TTAGTCAGCCGAGCTAGCTACGAGAATGTTTTTAAAAA 355
| ||| | |||| | |||||| || |||||| ||||||||| || ||||||| ||||||
Sbjct 480 TCTTCTTACTTG-CATTCTCACTT-GTCAGCAAAGCTAGCTATGAAAATGTTTCTAAAAA 537
Query 356 GTGGATCCCTGAACTCCA-ACACTT-TGCTCCAGGAGTTCCCCT-AGTCCTTGTCGGTAC 412
|||| | |||||||| | ||| || |||||| || |||||| | | |||| || || |
Sbjct 538 GTGGGTTCCTGAACT-GAGACA-TTATGCTCCTGGTGTTCCCATCA-TCCTCGTTGG-AA 593
Query 413 CAAA--TTAGATCTTCGTGAAGATAAGC-ATTATTTGGCTGACCATCCTGG-ACTATCCC 468
|||| || |||||||| || ||||||| ||| ||| || || || ||||| || | |
Sbjct 594 CAAAGCTT-GATCTTCGAGATGATAAGCAATTCTTT-GCCGAGCACCCTGGTGCTGT-GC 650
Query 469 CTGTAACTACTGCACAGGGAGAGGAA-TTGCGTAAGCTAATTGGCGCGACGT-ATTACAT 526
|| | |||| || ||||| || ||| | | ||||| ||||| ||| | | ||| ||
Sbjct 651 CTATCTCTACCGCTCAGGGTGAAGAACTAAAG-AAGCTGATTGGGGCG-CCTGCTTATAT 708
Query 527 TGAGTGTAGCT-CAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCCGCAATAAAGG 585
|| || || | |||||||||||||||||||||||||||| |||||| | || || ||||
Sbjct 709 CGAATGCAG-TGCAAAAACTCAACAGAATGTGAAAGCAGTGTTTGATGCGGCTATCAAGG 767
> AT3G48058.1 | Symbols: | pseudogene of Rac-like GTP-binding
protein | chr3:17742335-17742715 FORWARD LENGTH=272
Length=272
Score = 128 bits (69), Expect = 9e-29
Identities = 123/148 (83%), Gaps = 8/148 (5%)
Strand=Plus/Plus
Query 486 GGAGAGGAATTGCGTAAGCTA-ATTGGCGCGACGTATTACATTGAGTGTAGCTCAAAAAC 544
||||||||| | || |||| | || || ||||| ||||||||||| ||||||||||||||
Sbjct 99 GGAGAGGAACTCCGCAAGC-ATATCGGAGCGACTTATTACATTGAATGTAGCTCAAAAAC 157
Query 545 TCAACAGAATGTGAAAGC-AGTTTTTGATTCCGCAAT-AAAGGAAGTGATCAAACC-GCT 601
|||||||||||||||||| | | |||||| | || || |||| | || || ||||| ||
Sbjct 158 TCAACAGAATGTGAAAGCCA-TATTTGATGCTGCTATCAAAGTA-GTAATTAAACCAGCA 215
Query 602 GGTTAAACAAAAGGagaagacgaagaag 629
| | |||||||||||||||| |||||||
Sbjct 216 G-TGAAACAAAAGGAGAAGAAGAAGAAG 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5