BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496475
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 977 0.0
> AT5G62900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 12 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr5:25248797-25249942 FORWARD LENGTH=778
Length=778
Score = 977 bits (529), Expect = 0.0
Identities = 561/576 (97%), Gaps = 4/576 (1%)
Strand=Plus/Plus
Query 1 TATAGACCCCTCACCTACGCTCTATAACTCTTTGACTCCTCTCTCTCCTGCTTTGCTCCG 60
||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 1 TATAGACCCCTCACCTACGCT-T-T-ACTCTTTCACTCCTCTCTCTCCTGCTTTGCTCCG 57
Query 61 CCGTGAGA-GAGAAACAAATGGGGAATTGTCAAGCGGCGGAGGCGGCAACGACGGTGATA 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CCGTGAGAGGAGAAACAAATGGGGAATTGTCAAGCGGCGGAGGCGGCAACGACGGTGATA 117
Query 120 CAACAACCAGACGGTAAATCGGTTAGATTTTACTGTACAGTAAACGCGAGCGAAGTGATT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CAACAACCAGACGGTAAATCGGTTAGATTTTACTGTACAGTAAACGCGAGCGAAGTGATT 177
Query 180 AAGTCTCATCCCGGTCACCACGTGGCTCTCCTCCTCTCCTCCGCCGTACCTCACGGTGGC 239
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 AAGTCCCATCCCGGTCACCACGTGGCTCTCCTCCTCTCTTCCGCCGTACCTCACGGTGGC 237
Query 240 TCTCTCCGCGTCACTCGTATAAAGCTTCTCCGTCCTTCTGATAACCTCTTGCTCGGCCAT 299
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 238 TCTCTCCGCGTCACTCGTATAAAGCTTCTTCGTCCTTCTGATAACCTCTTGCTCGGTCAT 297
Query 300 GTCTATAGACTCATCTCCTCCGAAGAGGTGATGAAAGGAATAAGAGCCAAGAAATCTGGA 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTTTATAGACTCATCTCCTCCGAAGAGGTGATGAAAGGAATAAGAGCCAAGAAATCTGGA 357
Query 360 AAGATGAAGAAGATTCATGGAGAGTTTTCTGTTGCAGAAGAAGAGATTAACTCACTAACC 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 AAGATGAAGAAGATTCATGGAGAGTTTTCTGTTGCAGAAGAAGAGATTAACCCACTAACC 417
Query 420 CTAAGATCTGAATCTGCTTCTGACAAAGACACTCAGAGAAAGATACATGAAAAGCAGAGA 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 CTAAGATCTGAATCTGCTTCTGACAAAGACACTCAGAGAAGGATACATGAAAAGCAGAGA 477
Query 480 GGGATGATGAACACAGGAGGAGCAACCAATAAAGTTAGAGCTTGGCAGCCTTCTCTTCAA 539
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAATGATGAACACAGGAGGAGCTACCAATAAAGTTAGAGCTTGGCAGCCTTCTCTTCAA 537
Query 540 AGCATCTCAGAATCTACAAGCTAAAACACTTCGATC 575
|||||||||||||||||||||||||||||||| |||
Sbjct 538 AGCATCTCAGAATCTACAAGCTAAAACACTTCAATC 573
Score = 222 bits (120), Expect = 3e-57
Identities = 133/139 (96%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 574 TCtttttttGATCATTTGATTTGTCTTTGTATTGTTGTTTTTCCCAATCAAATTTGTAAA 633
||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 607 TCTTTTTTTTATCATTTCATTTCTCTTTGTATTGTTGTTTTTCCCAATCAAATTTGTAAA 666
Query 634 GGAAGAAAACCCATTTGATTGTGGTTGAAGAAGAAGAAACTTTTGTCATTTTGTAACTT- 692
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 GGAAGAAGACCCATTTGATTGTGGTTGAAGAAGAAGAAACTTTTGTCATTTTTTAACTTT 726
Query 693 AATAATAATAACTGAAGAA 711
|||||||||||||||||||
Sbjct 727 AATAATAATAACTGAAGAA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5