BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496477
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62920.1 | Symbols: ARR6 | response regulator 6 | chr5:25252... 1155 0.0
AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regula... 425 2e-118
> AT5G62920.1 | Symbols: ARR6 | response regulator 6 | chr5:25252386-25254212
REVERSE LENGTH=974
Length=974
Score = 1155 bits (625), Expect = 0.0
Identities = 736/789 (93%), Gaps = 9/789 (1%)
Strand=Plus/Plus
Query 1 CATTCTTTGATCAATGGCTGAAGTTTTGCTACTGAGAAAGATGGAGATTCCCAACGATCC 60
||||| ||||||||||||||||||| |||||| ||| ||||||||||||| |||| || |
Sbjct 42 CATTCGTTGATCAATGGCTGAAGTTATGCTACCGAGGAAGATGGAGATTCTCAACCATTC 101
Query 61 TTCAAAGTTTGGATCACCGGATCTTCTTCATGTTCTTGCCGTCGATGACAGTCACGTTGA 120
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 102 TTCAAAGTTTGGATCACCGGATCCTCTTCATGTTCTTGCCGTCGACGACAGTCACGTTGA 161
Query 121 TCGGAAATTCATTGAGCGTTTGCTCAGAGTCTCTTCTTGTAAAGTTACTGTTGTTGACAG 180
||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 162 TCGTAAATTCATCGAGCGTTTGCTCAGAGTATCTTCTTGCAAAGTTACTGTTGTTGATAG 221
Query 181 TGCAACAAGAGCTCTCCAATATCTTGGTTTGGGTGTTGAGGAAAAATCCGTTGGTTTTCA 240
||||||||||||||||||||| |||||||||| ||||||||||||||| || |||||| |
Sbjct 222 TGCAACAAGAGCTCTCCAATACCTTGGTTTGGATGTTGAGGAAAAATCAGTCGGTTTTGA 281
Query 241 GGATTTGAAGGTTAACTTAATTATGACTGATTACTCAATGCCCGGTATGACTGGATATGA 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GGATTTGAAGGTTAATTTAATTATGACTGATTACTCAATGCCCGGTATGACTGGATATGA 341
Query 301 ACTCTTGAAGAAGATCAAAGAATCCTCAGCTTTTAGACAAGTACCGGTGGTGATTATGTC 360
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 342 ACTCTTGAAGAAGATCAAAGAATCCTCAGCTTTTAGAGAAGTACCGGTGGTAATTATGTC 401
Query 361 CTCTGAGAACATTTTGCCTCGTATTGATAGATGTCTTGAAGAAGGAGCTGAAGATTTCTT 420
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 402 CTCCGAGAACATTTTGCCTCGTATTGATAGATGTCTTGAAGAAGGGGCTGAAGATTTCTT 461
Query 421 ACTGAAGCCAGTAAAACTCTCTGATGTAAAAAGATTAAGAGATTCTCTAATGAAAGTTGA 480
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 462 ACTGAAGCCGGTAAAACTCTCGGATGTAAAAAGATTAAGAGATTCTCTAATGAAGGTTGA 521
Query 481 AGATTTAG-CTTTCACAAAGAGTATTCAGAAGAGAGAGCTAGAAACAGAGAACGTCTACC 539
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 522 AGATTT-GTCTTTCACAAAGAGTATTCAGAAGAGAGAGCTAGAAACAGAGAATGTCTACC 580
Query 540 CTGTTCACTCACAGCTCAAACGCGCGAAGATCTGAGCTTTCCAATGCAAATTCCATGACT 599
|||||||||| |||||||||||||| |||||||||||| ||| ||||||||||| |||||
Sbjct 581 CTGTTCACTCGCAGCTCAAACGCGCAAAGATCTGAGCTCTCCGATGCAAATTCCGTGACT 640
Query 600 GGATCTTAGAAAAAGCTTTTT-ATATACAGAGAAGCTTCAAGACTTCA-TGCACTTGAGC 657
|||||||||||||||| |||| ||||||||| | ||||||||||| || |||||||||||
Sbjct 641 GGATCTTAGAAAAAGCCTTTTCATATACAGA-A-GCTTCAAGACT-CAATGCACTTGAGC 697
Query 658 CTAACACTGATGATTCTCTCAAAGTTTAATGACCTATACAATTTTCCAGCCCCTACGGCt 717
||| |||||||||||||| | | | ||||||||||||||||||||||| |||||| |||
Sbjct 698 CTA-CACTGATGATTCTCGCCA-GCTTAATGACCTATACAATTTTCCAACCCCTATGGCC 755
Query 718 ttttttGCTGATTGAATTCAGCGGATTTATTCATATAGTAGTAATGTAAATGGCATAGAG 777
||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 756 TTTTTCGCTGATTGAATTCAGTGGGTTTATTCATATAGTAGTAATGTAAATGGTATAGAG 815
Query 778 ATGAGCAAA 786
|||||||||
Sbjct 816 ATGAGCAAA 824
> AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regulator
5 | chr3:17758427-17760874 REVERSE LENGTH=1374
Length=1374
Score = 425 bits (230), Expect = 2e-118
Identities = 385/459 (84%), Gaps = 13/459 (3%)
Strand=Plus/Plus
Query 73 ATCACCGGATCTTCTTCATGTTCTTGCCGTCGATGACAGTCA-CGTTGATCGGAAATTCA 131
||||||| | ||||||||||||||||| || ||||| ||| | ||||||||||| ||||
Sbjct 194 ATCACCGAAACTTCTTCATGTTCTTGCTGTTGATGATAGT-ATGGTTGATCGGAAGTTCA 252
Query 132 TTGAGCGTTTGCTCAGAGTCTCTTCTTGTAAAGTTACTGTTGTTGACAGTGCAACAAGAG 191
| ||||| || ||||||||||| |||||||||||||||||||| || ||||| |||||||
Sbjct 253 TCGAGCGGTTACTCAGAGTCTCATCTTGTAAAGTTACTGTTGTCGATAGTGCGACAAGAG 312
Query 192 CTCTCCAATATCTTGGTTTGGGTGTTGAG-GAA-AA-A--TCCGTTGGTTTTCAGGATTT 246
|| | ||||||||||| || | || ||| ||| || | || ||||| ||| ||||| |
Sbjct 313 CTTTACAATATCTTGGATTAGATG--GAGAGAATAATAGTTCGGTTGGATTTGAGGATCT 370
Query 247 GAAGGTTAACTTAATTATGACTGATTACTCAATGCCCGGTATGACTGGATATGAACT-CT 305
|||| |||| || || ||||| |||||||| ||||| || ||||||||||||||||| |
Sbjct 371 GAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGACTGGATATGAACTAC- 429
Query 306 TGAAGAAGATCAAAGAATCCTCAGCTTTTAGACAAGTACCGGTGGTGATTATGTCCTCTG 365
||||||||||||||||||| |||||||| ||| || |||| || ||||||||||| || |
Sbjct 430 TGAAGAAGATCAAAGAATCATCAGCTTTCAGAGAAATACCAGTTGTGATTATGTCTTCAG 489
Query 366 AGAACATTTTGCCTCGTATTGATAGATGTCTTGAAGAAGGAGCTGAAGATTTCTTACTGA 425
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 490 AGAACATCTTGCCTCGTATCGATAGATGTCTTGAAGAAGGAGCTGAAGATTTCTTATTGA 549
Query 426 AGCCAGTAAAACTCTCTGATGTAAAAAGATTAAGAGATTCTCTAATGAAAGTTGAAGATT 485
|||| || ||| | ||||||| || ||||||||||||||| ||||||||| ||| ||
Sbjct 550 AGCCTGTGAAATTAGCTGATGTGAAGAGATTAAGAGATTCTTTAATGAAAGCTGAGGAAA 609
Query 486 TAGCTTTCACA-AAGAGTATTCAGAAGAGAGAGCTAGAA 523
|||||| | | || | ||| || ||||||||||| |||
Sbjct 610 GAGCTTTTA-AGAATATTATGCACAAGAGAGAGCTTGAA 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5