BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496478
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62930.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1347 0.0
> AT5G62930.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr5:25254888-25256617 FORWARD LENGTH=1013
Length=1013
Score = 1347 bits (729), Expect = 0.0
Identities = 827/873 (95%), Gaps = 12/873 (1%)
Strand=Plus/Plus
Query 1 AGTGAACCGGAGGGAGACAGAGAGATGAGGCCGGAGATAGTTCTGTTCGGCGACTCGATT 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTGAACCGGAGGGAGACAGCGAGATGAGGCCGGAGATAGTTCTGTTCGGCGACTCGATC 60
Query 61 ACGGCTCAGTCGTTTAGATCCGGCGGTTGGGGATCTGCTCTTGCCGACGCTTACTCTCGC 120
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGGCGCAGTCTTTTAGGTCCGGCGGTTGGGGATCTGCTCTTGCCGACGCTTACTCTCGC 120
Query 121 AAGGCTGATGTTGTAGTTCGTGGCTATGGCGGCTACAACACCCGATGGGCTCTCTTCTTG 180
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAGGCTGATGTTGTGGTTCGAGGCTACGGCGGCTACAACACCCGATGGGCTCTCTTCTTG 180
Query 181 CTTCATCACATTTTCCCTCTCGGCTCTTCGTCTCCTCCTGTTGCGACGACGATATTCTTC 240
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CTTCATCACATCTTCCCTCTCGGCTCTTCGTCTCCTCCTGTTGCTACGACGATATTCTTC 240
Query 241 GGTGCAAACGATGCAGCTCTTAAAGGAAGAACCAGTGATAGACAACATGTGCCGGTGGAA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTGCAAACGATGCAGCTCTCAAAGGAAGAACCAGTGATAGACAACATGTGCCGGTGGAA 300
Query 301 GAGTACAGAGATAATGTCAGAAAGATTGTTCAGCATTTGAAGAAATGTTCACCTACCATG 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GAGTACACAGATAATGTCAGAAAGATTGTTCAGCATTTGAAGAAATGTTCACCTACAATG 360
Query 361 CTAATCGTGCTTGTAACTCCACCACCAATTGATGAAGCTGGACGTCAAAGTTATGCAGAA 420
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTAATTGTGCTTATAACTCCACCACCAATTGATGAAGCTGGACGTCAAAGTTATGCAGAA 420
Query 421 TCAATCTATGGTGAGAAAGCTATGAAAGAGCCTGAGAGAACAAACCAAACAAC-GGGAAT 479
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 421 TCAATCTACGGTGAGAAAGCTATGAAAGAGCCTGAGAGAACAAACGAAACAACAGGG-GT 479
Query 480 ATATGCACAACATTGTGTTGCATTGGCCGAGGAACTTGGTCTGCGATGTGTCAACTTATG 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 ATATGCACAACATTGTGTTGCATTGGCCGAGGAACTCGGTCTGCGATGTGTCAACTTATG 539
Query 540 GTCTAAGATGCAGGAAACCAATGATTGGCAGAAAAAGTACCTAAGTGATGGGCTACATCT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GTCTAAGATGCAGGAAACCAATGATTGGCAGAAAAAGTACCTAAGTGATGGGCTCCATCT 599
Query 600 CACGCCTGAAGGCAATGGAGTAGTTTTTGATCAAGTCTCGAGAGTTTTTAGAGAAGCTTG 659
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 CACGCCTGAAGGCAATGGGGTAGTTTTTGATGAAGTCTCGAGAGTTTTTAGAGAAGCTTG 659
Query 660 GCTCTCTCCTGAAGAAATGCCATTTGATTTCCCTCATCATTCACAGATCGACGGTGAAAA 719
||||||||| ||||||||||| ||||||||||| |||||||| || ||||| ||| ||||
Sbjct 660 GCTCTCTCCCGAAGAAATGCCGTTTGATTTCCCCCATCATTCGCATATCGATGGTAAAAA 719
Query 720 CCCATCGAAAGCTTTCGAAGAACGTTGCTTATAACGATCATCCC-AAATTCATGAG---- 774
||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 720 CCCATCGAAAGCTTTTGAAGAGCGTTGCTTATAACGATCATCCCCAAATTCATGAGCAGG 779
Query 775 TTT-T---GATTTAAATTCATGAACACGTTTCAATGTTGTCATTTAGAAAACTCTCC-AT 829
||| | |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 780 TTTGTTTTGATTTAAATTCATGAACACGTTTCAATGTTGTGATTTAGAAAACTCTCGGAT 839
Query 830 GTGAATAAATATCTAAAAAGTGCATCATCACTA 862
||||||||||| |||||||||||||||||||||
Sbjct 840 GTGAATAAATACCTAAAAAGTGCATCATCACTA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5