BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496483
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62990.1 | Symbols: emb1692 | Ubiquitin carboxyl-terminal hy... 2241 0.0
> AT5G62990.1 | Symbols: emb1692 | Ubiquitin carboxyl-terminal
hydrolase family protein | chr5:25277438-25279312 FORWARD LENGTH=1617
Length=1617
Score = 2241 bits (1213), Expect = 0.0
Identities = 1456/1573 (93%), Gaps = 17/1573 (1%)
Strand=Plus/Plus
Query 33 CTTTTACTTTTGTCTTTGTAAAATTCAATCACTGCAATTACCAAAGGATCAAGAATATGA 92
||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct 54 CTTTTACTTTTGTCTTTGTAAGGTTC-ATCACCGCAATTACCAAAGGATCAAGAAGATGA 112
Query 93 CTTTTTGAGGGATTTTGCGGATGATGATGGCGCTTACTCAACTGGTTCCTTCCTCACCAG 152
||| |||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 113 ATTTCTGAGAGATTTTGCGGATGATGATGGCGCTTACTCAACTGGTTCCTTCTTCTCCAG 172
Query 153 ACAAGCTTTTCTTTTTCTCCAGCTTCTTCCTCCCTTCAATTCCTCTGGAGATTCGTACAA 212
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 173 AGAAGCTGTTCTGTTTCTCCAGCTTCTTCCTCCCTTCAATTCCTCTGGAGATTCGTAGAA 232
Query 213 GTAACCTAAGTACTAGAACCAGTTCCAAGAAACTCGGAAGTCTGTCCTTGAATATCTCAT 272
||||| ||| ||| | |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 233 GTAACGTAACTACGAAAACCAGTTCCAAGAAACTCGGAAGTCTGTCTTTGAACATCTCAT 292
Query 273 GTTCAGCTCACAAGATTGTTCGGAGTCCATCTTTAGACAGACATGTAGTGAAGCAGAACA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GTTCAGCTCACAAGATTGTTCGGAGTCCATCTTTAGACAGACATGTAGTGAAGCAGAACA 352
Query 333 GAGTTCGCTTTGTGCAGAAGTTGAAAACTATACTTCTCTCGAAACCAAAGCATTTCATAC 392
||||||||||||||||||||||||| ||| | |||||||| ||||||||||||| ||| |
Sbjct 353 GAGTTCGCTTTGTGCAGAAGTTGAACACTTTGCTTCTCTCTAAACCAAAGCATTACATTC 412
Query 393 CAATTCAAATCCTTTACAAATGCCGATCTTACCTCTGCATCGAAAATCC-TCGGGCCATT 451
||||| ||||||| || ||||| || ||||||||||||||||||||||| | || |||||
Sbjct 413 CAATTGAAATCCTCTATAAATGTCGTTCTTACCTCTGCATCGAAAATCCATTGG-CCATT 471
Query 452 CTCTCCATGATTCGTCGGTATCCTACAATCTTTGAACTTTTTACAACACCTACGCCACAT 511
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 472 CTCTCAATGATCCGTCGGTATCCTACAATCTTTGAACTTTTTACGACACCTACGCCACAT 531
Query 512 TTGCCTATGAATGCCACAAAGCCGTTATCTCAACTCTGTGTCCGTTTGACATCTGCTGCA 571
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 532 TTGCCTATGAATGCCACTAAGCCGTTATCTCAACTCTGTGTTCGTTTGACATCGGCTGCA 591
Query 572 TCATCCCTTGCCATGCAAGAATTGAATCTGAAGTCTGAGATCTCTGATCAATTGGCTACT 631
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 592 TCATCCCTTGCAATGCAAGAATTGAATCTGAAGTCTGAGATCTCTGATAAATTGGCTACT 651
Query 632 AAGCTCCAGAAGCTACTAATGTTGTCATCTCACCGCAGGTTGCTTTTGTCTAAACTGGTT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AAGCTCCAGAAGCTACTAATGTTGTCATCTCACCGCAGGTTGCTTTTGTCTAAACTGGTT 711
Query 692 CACATCGCCCCGGATTTTGGCTTCCCTCCTAATTTCAGGTCTCGCCTCTGCAATGACTAT 751
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 712 CACATTGCCCCAGATTTTGGCTTCCCTCCTAATTTCAGGTCTCGGCTCTGCAATGACTAT 771
Query 752 CCTGACAAGTTCAAGACTGTGGATACTTCCTACGGAAGAGCACTTGAGCTTGTCTCGTGG 811
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 772 CCGGACAAGTTCAAGACTGTGGATACTTCCTATGGAAGAGCACTGGAGCTTGTCTCGTCG 831
Query 812 GATCCCGAATTGGCAAACCAAATGCCATCTCCTGAAGTTGTTGATAGGGGTTTGATTGTT 871
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 832 GATCCCGAATTGGCGAACCAAATGCCATCTCCTGAAGTTG---ATAGGGGTTTGATTGTT 888
Query 872 GATCGTCCTTTGAAGTTCAAGCGTTTGAATCTTCGGAAAGGTTTAAATTTGAAGAGGCGA 931
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 889 GATCGTCCTTTGAAGTTCAAGCGCTTGAATCTTCGGAGAGGTTTAAATTTGAAGAGACGG 948
Query 932 CACCAAAACTTCTTGATAAAATTTAGAGAATCACCTGATGTGTGTCCTTACAAAATGTCA 991
|||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 949 CACCAAGGTTTCTTGATAAAGTTCAGAGAATCACCTGACGTGTGTCCTTACAAAATGTCA 1008
Query 992 TCTGAAGATCTGGCAAGTGAGTCAATTGAGGCGGAGAAGCGAGCGTGCGCAGTTGTAAGA 1051
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1009 TCTGACTATCTGGCAAGTGAGTCAATTGAGGCGGAGAAGCGAGCTTGCGCAGTTGTAAGA 1068
Query 1052 GAGGTGTTGGGGTTAACGGTTGAGAAAAGGACGTTGATTGATCATTTGACACATTTCAGG 1111
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1069 GAGGTGTTGGGGTTAACGGTTGAGAAAAGGACCTTGATTGATCATTTGACACATTTCAGG 1128
Query 1112 AAGGAGTTTGCTTTACCAAACAAGTTAAGAG-CATTGATAGTCAGACATCCAGAGCTATT 1170
||||||||| |||||||||| |||||||||| | ||||| || |||||||||||||||||
Sbjct 1129 AAGGAGTTTTCTTTACCAAATAAGTTAAGAGAC-TTGATTGTGAGACATCCAGAGCTATT 1187
Query 1171 CTATGTGAGTATAAAAGGCACGAGAGACTCTGTGTTTCTCGTTGAAGCATACAACGACAA 1230
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1188 CTATGTGAGTATAAAAGGCATGAGAGACTCTGTGTTTCTCGTTGAAGCATACAATGACAA 1247
Query 1231 TGGTGATCTTCTAGAGAAAGATGAGACATTGGTGATAAGAGAACGATTGATAGATCTTAT 1290
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1248 TGGTGATCTTCTAGATAAAGATGAGAGATTGGTGATAAGAGAACGTTTGATAGATCTTAT 1307
Query 1291 TCAAGAAGGAAAGAGAATTAGACGTGAACGGAGaaaaaaaGGCGATAAAAGAG-TGG-AA 1348
|||||||||||||||||||||||||||||| |||| |||||||| | | | || ||
Sbjct 1308 TCAAGAAGGAAAGAGAATTAGACGTGAACGAAGAAGAAAAGGCGCCACACTTGGTGATAA 1367
Query 1349 GAGTATAGCAATGGTGATAAC-A--GA-GATGAAACCATTGATGATTACGAAAGTGATCT 1404
|| | | || | || || | || |||||||| ||||||||||| || ||||||||
Sbjct 1368 AAGCGTGG-AA-GA-GAAAAGGAAAGATGATGAAACAATTGATGATTATGATAGTGATCT 1424
Query 1405 GGATGATGAATATGAAGATGGCTTTGAGAATTTGTTTGACTCAGAAGATTCAGGTGTGGA 1464
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1425 GGATGATGAATATGAAGATGGGTTTGAGAATTTGTTTGACTCAGAAGATTTAGGTGTGGA 1484
Query 1465 ATATCATTTCGACGAAGAAGAAGATGATGACGAGGCACTGGTTAATGGTGAAAGTATAGA 1524
||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||
Sbjct 1485 ATATCATTTCGACGAAGAAGATGATGATGATGAGGCAGGGGTTAATGGTGAAAGTGTAGA 1544
Query 1525 GTATTGGAGTAGAAAGCTTTCTTCTTCTGGTAGTAACAGTGATGAAGCAAAGAGTGCTGT 1584
||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||
Sbjct 1545 GTATTGGAGTAGAAAGCTTTCGTCTTCAGGTAGTAGCAGTGATGAAGCAAATAGTGCTGT 1604
Query 1585 GGAATCATGGTGA 1597
|||||||||||||
Sbjct 1605 GGAATCATGGTGA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78865056195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5