BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496485
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63050.1 | Symbols: EMB2759 | embryo defective 2759 | chr5:2... 2176 0.0
> AT5G63050.1 | Symbols: EMB2759 | embryo defective 2759 | chr5:25292435-25294995
FORWARD LENGTH=1496
Length=1496
Score = 2176 bits (1178), Expect = 0.0
Identities = 1391/1489 (93%), Gaps = 33/1489 (2%)
Strand=Plus/Plus
Query 1 ctctcctatctcttccaatctcctctcctctctatctatccgcttgcccc-tttcttctt 59
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 4 CTCTCCTATCTCTTCCAATCTCCTCTCCTCTCTATCTATCCGCGT-CCCCATTTCTTCTT 62
Query 60 ccctctaAAATTCCAATCTTTCTCGTTGC-TTTTTTGATTCAAAGCTTCAAGATTTTCAA 118
||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 63 CCCTCTAAAATTCCAATCTTTCTTATTGCTTTTTTTTATTCAAAGCTTCAAGATTTTCAC 122
Query 119 TAGGGTTCTTGCCC-TTCTGCTTATTTGACAAATTCTGTTCCTTTCTTTCGTATTCTCAC 177
|||||||||| ||| |||| |||||| || ||||||||||| ||||||||||||||||||
Sbjct 123 TAGGGTTCTTTCCCTTTCT-CTTATTCGATAAATTCTGTTCTTTTCTTTCGTATTCTCAC 181
Query 178 GGACGAACAAA--CC----C--C-AGCTCATGATTGAGATTGTGGCCTTTGAGTAAATGA 228
||||||||||| || | | |||||||||||||||||||||| |||||||||||||
Sbjct 182 GGACGAACAAACCCCAAGGCAACGAGCTCATGATTGAGATTGTGGCTTTTGAGTAAATGA 241
Query 229 TTCACTGCTCAGCTAGAGACAATGGTGTTGGTAACCCATAAATTGCAGGGTTCACATGTC 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTCACTGCTCAGCTAGAGACAATGGTGTTGGTAACCCATAAATTGCAGGGTTCACATGTC 301
Query 289 TTGTCTCCTTGGAGTTCACCAACATGGACCAGAGGCTTGAT-TTTGAAGAGACCTGTTAC 347
||||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 302 TTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTG-TGTTTAAAGAGACCTGTTAC 360
Query 348 GACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTT 420
Query 408 TAGTTTAGGGTCCTCTTGCAATGGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTT 467
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAGTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTT 480
Query 468 TAAAGGTGGCATCAAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAA 527
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAA 540
Query 528 TAACTCAGTCAAACTATCTTACCGTTCGGATGATGACGAAAATAATGTGAACGGCTCTCC 587
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 541 TAACTCTGTCAAACTATCTTACCGTTCAGATGATGACGAAAATAATGTGAATGGCTCCCC 600
Query 588 AAAGGCACAAAACACTTCGTTTTCATATACATCGGAAACAGAGGATTCAATCACAGGGCA 647
||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 601 AAAGGCACAGAACACTTCGTTTTCATATACCTCGGAAACAGAGGATTCCATGACAGGGCA 660
Query 648 ACCTGCTATTCAGAAACTATTCAAGAAATGGTTAACATTGTTGCGCACGCAATCACCTAT 707
||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 661 ACCCGCTATTCAGAAACTATTCAAGAAATGGTTGACATTGTTGCGCACACAGTCACCTAT 720
Query 708 TCAAGTGATTGATGAGGCTTTAGGAGGAGAACAGGTTCCACCAGCGACGAAGCAAGAAAC 767
|||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 721 TCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGAAGCAAGAAAC 780
Query 768 TGAAACAGAAATCCGGAAAACAGAAAGCCTCCAGAGTACCAAAAATACAGTTTGGTCCTG 827
|||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 TGAAACAGAAATTCGGAAAGCAGAAAGTCTCCAGAGTACCAAAAATACAGTTTGGTCCTG 840
Query 828 GTTTTGGAGTCTAGACGCAGCTATCAAGATTCCATTGCTGTTATTTGTTCCAGCTTTCCT 887
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 GTTTTGGAGTCTAGACGCAGCTATCAAGATTCCGTTGCTGTTATTTGTTCCAGCTTTCCT 900
Query 888 AGCTGTTAACGCGATCTATGGAGCTGAAGTCACAAAGGAATTATCCCCAATGTGGGTGGT 947
||||||| ||||||||| ||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 901 AGCTGTTTACGCGATCTGTGGTGCTGAAGTTACAAAGGAATTATCCCCTATGTGGGTGGT 960
Query 948 CGGCCCCTTGATTGTCGCCCTTTATATCAAAATGTTCCAAGGACTATGCTCCCTTTACGC 1007
||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 961 TGGCCCCTTGATCATCGCCCTTTATATAAAAATGTTCCAAGGACTATGTTCCCTTTACGC 1020
Query 1008 CTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACTTACCATCGTATTACCTTGTAGC 1067
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1021 CTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACCTACCATCGTATTATCTTGTAGC 1080
Query 1068 ATACCATTACATTGCCCATGGAAAGCTCAAAGACGACGTGAAAGCTCTACTGTTTAGACC 1127
|||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||| |||
Sbjct 1081 ATACCAATACATTGCCGATGGAAAGCTCAAAGACGACGTTAAAGCTCTAGTGTTTAAACC 1140
Query 1128 AGTGGTGGCCATCAAGAACACAGACTACAAAGAGCTCACACGCACAAAGCTGAAACAGTT 1187
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 AGTGGTGGCCATCAAGAACACAGACTACAAAGAGCTCACACGCACGAAGCTGAAACAGTT 1200
Query 1188 CCAAGAATGGATCGTTGAGAAATACCTGGATTTTGTTGAATCGGTATGGCCTTATTACTG 1247
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 CCAAGAATGGATCATTGAGAAATACCTGGATTTTGTTGAATCTGTATGGCCTTATTACTG 1260
Query 1248 CAGAACTATCAGATTCCTGAAGAGGGCTAACCTGATTTGAAGATCTTCAACATGGAACCC 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAGAACTATCAGATTCCTGAAGAGGGCTAACCTGATTTGAAGATCTTCAACATGGAACCC 1320
Query 1308 T----T-CT--C-----AGGGCTTCTCTATGATCCCTCTCTGTGCTTTGTTTACCttttt 1355
| | || | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1321 TCAAATTCTGACTTCTCAGGGCTTCTCTATGATTTCTCTCTGTGCTTTGTTTACCTTTTT 1380
Query 1356 tttATT----CTTAATTTTAGGAAGGCTTTTCATGTT-TATGTTGTTGTCTCCATGTATA 1410
||| || ||||||||||||||||||||||||||| | |||| || |||| |||||||
Sbjct 1381 TTTTTTTTTTCTTAATTTTAGGAAGGCTTTTCATGTTGTTTGTTCTTATCTCTATGTATA 1440
Query 1411 CTGTTATCTTTTTTGAGGTTTTACAATGAGTTCTTTTACTATTAAGGGT 1459
||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1441 CTGATACCTTTTTTGAGGTTTTACAATGAGTTCTTTTAATATTAAGGGT 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5