BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496486
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63060.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1332 0.0
> AT5G63060.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr5:25294954-25296849 REVERSE LENGTH=1055
Length=1055
Score = 1332 bits (721), Expect = 0.0
Identities = 956/1060 (90%), Gaps = 54/1060 (5%)
Strand=Plus/Plus
Query 1 CGCAAAATGCCAAATTCTGAATTC-T-TAGCTCTGTGGTGAGCAAAGCCCAGCTTTTGAA 58
|||||||| ||||||||||||||| | | |||||||||||| ||||||||||||||||||
Sbjct 1 CGCAAAATTCCAAATTCTGAATTCTTCTTGCTCTGTGGTGAACAAAGCCCAGCTTTTGAA 60
Query 59 A-TTTC--TTTCAAGT-TC-TGAAT-TCCTTTAT--CAATCAAATTTCT---GAG--AA- 104
| || | ||| | || | ||| | ||| | ||||||| ||| ||| ||
Sbjct 61 ACTTCCGAATTC--CTCTCATCAATCTAATTTCTGAGAATCAAA-CTCTAAAGAGTAAAT 117
Query 105 TCAAACT-C---TA--AAATGTCGATTCGTTTCGGTTCAACCCTCGTTGCTGCTTCAGTC 158
| ||| | || |||||||||||||||| | |||||| |||||||||||||||||
Sbjct 118 TTTTACTCCTTGTAGTCAATGTCGATTCGTTTCAGCTCAACCATCGTTGCTGCTTCAGTC 177
Query 159 AATTTCAAAAGCTCGAAGAATTTGAAAATTAATCGATCCCGGAACTGCAGATTCTCTGTC 218
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 178 AATTTCAAAAGCTCGAAGAATTTGAACATTAATCGATCTCGGAACTGCAGATTCTCTGTC 237
Query 219 CGGAGTTGCGTGTCTGAATCCCATCATGCGCACAAGCTAGTTTTGGAAGTAAAAGAACGG 278
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 CGAAGTTGCGTGTCTGAATCCCAACATGCGCACAAGCTAGTTTTGGAAGTAAAAGAACGG 297
Query 279 CTTGCCAAAGATTGTACTAGTCTCCCTGTTGGCAAATATGGAAGAGATGATGAGGATATG 338
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 298 CTTGCGAAAGATTGTACTAGTCTCCCACTTGGCAAATATGGAAGAGATGATGAGGATATG 357
Query 339 ATCCTCTGGTTTTTAAAAGATCGGAGATTTTCAGTTGATGAAGCTATTGGAAAGCTAACT 398
|||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 358 ATCCTCTGGTTTTTGAAAGATCGCAGATTTTCTGTTGATGAAGCCATTGGAAAGCTAACT 417
Query 399 AAAGCTATTAAATGGCGTCATGAGTTCAAGGTAGATGAGCTTTCTGAAGATTCTATCAAA 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 AAAGCTATTAAATGGCGTCATGAGTTCAAGGTAGATGAGCTTTCTGAAGATTCTATTAAA 477
Query 459 GCAGCTACTGACACAGGAAAAGCCTTTGTCCATGGTTTTCTAGATGTTAAAGGTCGACCA 518
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 478 GCAGCTACTGACACTGGAAAAGCCTATGTACATGGTTTTCTAGATGTTAAAGGTCGGCCA 537
Query 519 GTGGTTATTGTTGCTCCTGCAAAGCACATCCCCGGGCTACTTGACCCAATAGAAGATGAA 578
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 538 GTGGTTATTGTAGCTCCTGCAAAGCACATCCCCGGGCTGCTTGATCCAATAGAAGATGAA 597
Query 579 AAGCTTTGTGTGTTCCTT-CTTGAGAAGGCTTTAAGTAAGTTACCAGCAGGGCAACACAA 637
|||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 598 AAGCTTTGTGTGTT-CTTACTTGAAAAGGCTTTAAGTAAGTTACCAGCAGGACAACACAA 656
Query 638 GATACTCGGGATATTTGATCTCCGTGGATTCGGATCTCAAAACGCAGATCTTAAGTTCTT 697
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 GATACTTGGGATATTTGATCTCCGTGGATTCGGATCTCAGAACGCAGATCTTAAGTTCTT 716
Query 698 GACTTTCCTGTTTGACGTATTTTACTATTACTATCCAAGCCGATTGGATGAAGTCCTTTT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GACTTTCCTGTTTGACGTATTTTACTATTACTATCCAAGCCGATTGGATGAAGTCCTTTT 776
Query 758 TGTAGATGCTCCATTCATATTCCAGCCAATTTGGCAATTCACCAAACCGTTGGTGAAGCA 817
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 777 TGTAGATGCTCCATTCATATTTCAGCCAATTTGGCAATTCACTAAACCGTTGGTGAAGCA 836
Query 818 ATACGCTTCTCTGGTCAAGTTTTGCTCAGCAGAGACCGTGAGAAAGGAGTATTTTACTGA 877
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 837 ATACGCTTCTCTGGTCAAGTTTTGCTCAGCAGAGACCGTCAGAAAGGAGTACTTTACTGA 896
Query 878 AGAAACATTACCATCAAATTTCCGGAGCTAAAGAGGTTT-T--------T-----C--TT 921
||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 897 AGAAACATTACCATCAAATTTCCGGAGCTAAAGAGGTTTATAAGAGACCTTTAAGCACTT 956
Query 922 ----CT---GTTGTTGTCGATATAAATGTGTATAGATAATTTG-AAGTATGGAGTAAAAG 973
|| |||||||||||| || ||||||||||||||||| |||||||||| |||||
Sbjct 957 ATTTCTTCTGTTGTTGTCGATTTATATGTGTATAGATAATTTTTAAGTATGGAG-AAAAG 1015
Query 974 G-ATA-CCCTTAATAGTAAAAGAACTCATTGTAAAACCTC 1011
| ||| ||||||||| ||||||||||||||||||||||||
Sbjct 1016 GGATAACCCTTAATATTAAAAGAACTCATTGTAAAACCTC 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5