BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496493
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | ... 2782 0.0
> AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1
| histone deacetylase 6 | chr5:25315624-25318347 REVERSE LENGTH=1746
Length=1746
Score = 2782 bits (1506), Expect = 0.0
Identities = 1660/1734 (96%), Gaps = 11/1734 (1%)
Strand=Plus/Plus
Query 1 TAGTAATGACTTTCTCAGGCATAGTAGACACAAATTTTGCTCGGAGTAAAAACTTGGGGA 60
|||||||||||||||||||||| || |||||||||||||||| |||| |||||||||| |
Sbjct 15 TAGTAATGACTTTCTCAGGCATTGTTGACACAAATTTTGCTCTGAGT-AAAACTTGGGAA 73
Query 61 Tagagagagacagagactctgagtgaga----ga--gagagaCGAAGATGGAGGCAGACG 114
||||||||||| || | ||| |||| || |||||||| |||||||||||||||
Sbjct 74 TAGAGAGAGACTCTGAGTGAGAGAGAGATTCTGAGTGAGAGACGGAGATGGAGGCAGACG 133
Query 115 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 193
Query 175 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGACATCCGATGAAACCTCACCGGA 234
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 194 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGCCACCCGATGAAGCCTCACCGGA 253
Query 235 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 313
Query 295 GCCCTAACCTCGCTGACGCCTCCGATATCGGCCGGTTTCATTCGCCGGAGTATGTTGATT 354
|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 314 GCCCTAGCCTCGCTGACGCCTCCGATATCGGCCGATTCCATTCGCCGGAGTATGTTGACT 373
Query 355 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCTCTTCACGAAACCTAAGGC 414
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 374 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCGCTGCACGAAACCTAAGGC 433
Query 415 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 493
Query 475 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 553
Query 535 TCAATTGGGGCGGTGGCCTTCACCATGCTAAGAAAAGCGAGGCCTCTGGGTTTTGCTATG 594
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 554 TCAATTGGGGCGGTGGGCTTCACCATGCTAAGAAAAGCGAGGCTTCTGGGTTTTGCTATG 613
Query 595 TAAATGATATCGTTTTAGGGATTCTCGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 654
|||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 614 TAAACGACATCGTGCTAGGGATTCTGGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 673
Query 655 TAGATATCGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 714
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TAGATATTGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 733
Query 715 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCCGGAACTGGTCACATAAGAG 774
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 734 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAG 793
Query 775 ATGTTGGCGCAGAAAAAGGGAAATACTATGCTCTAAATGTTCCGCTAAACGATGGTATGG 834
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 794 ATGTTGGCGCTGAAAAAGGGAAATACTATGCTCTAAATGTTCCACTAAACGATGGTATGG 853
Query 835 ACGATGAACGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 894
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ACGATGAAAGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 913
Query 895 AGCCAGAGGCAGTTGTTCTTCAATGTGGGGCTGACTCGTTAAGTGGTGATCGGTTGGGTT 954
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 914 AGCCAGAGGCAGTTGTTCTTCAGTGTGGTGCTGACTCCTTAAGTGGTGATCGGTTGGGTT 973
Query 955 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1033
Query 1015 TTCCTCTCATGGTCTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCTCGTTGCTGGT 1074
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1034 TTCCTCTCATGGTGTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGT 1093
Query 1075 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCAGACAACAAACTCCCTTACAATGAGT 1134
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1094 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCGGACAACAAACTCCCTTACAATGAGT 1153
Query 1135 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAGGTCCAATGGAGAATT 1194
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1154 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAAGTCCTATGGAGAATT 1213
Query 1195 TAAACACGCCAAAAGATATGGAGAAGATAAGGAACACATTGCTGGAACAACTTTCGGGAC 1254
|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1214 TAAACACGCCCAAAGATATGGAGAGGATAAGGAACACGTTGCTGGAACAACTTTCGGGAC 1273
Query 1255 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1333
Query 1315 AGCCGGAAGAAGACATGGAG-CAAAGACCAAAGCCTCGCATTTGGAGTGGAACTGTGACT 1373
|||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||||| ||||
Sbjct 1334 AGCCGGAAGATGACATGGAGACAA-GACCAAAACCTCGCATCTGGAGTGGAACTGCGACT 1392
Query 1374 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCAGGTCGTGGTGGC 1433
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1393 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCATGTCGTGGTGGC 1452
Query 1434 GCAATTATGGACAGGGACTCTACAGGTGAAGATGAAATGGAAGACGATAACCCAGAGCCA 1493
|||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1453 GCAACTACGGACAGGGACTCTACCGGTGAAGATGAAATGGATGACGATAACCCAGAGCCA 1512
Query 1494 GACGTGAATCCCCCATCGTCTTAAACCAGCTTGATGGTT-GGTGGGTCTTTTGCCATATG 1552
||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1513 GACGTGAATCCTCCATCGTCTTAAACCAGCTTGATGGTTTGGTGTCTCTTTTGCCATATG 1572
Query 1553 GTAATGTCGGCAGATTTAAGACACAAGTTAGGGGAATGA-TGATTCTTTCATGTTTTTTC 1611
|||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct 1573 ATAATGTCGGCAGATTTAAGAAACAAGTTAGGGGAATGAATGATTCTTTGATGTTTTTTC 1632
Query 1612 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACGGTGACAACTGACAAGT 1671
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1633 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACAGTGACAACTGACTAGT 1692
Query 1672 ATTTTGGCTCAAGTTAGAAAATCAGAAGATGTGAAAAATGCAAAGAAACTTTTT 1725
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1693 ATTTTGGCCCAAGTTAGAAAATCAGAATATGTGAAAAATGCAAAGAAACTTTTT 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5