BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496494
Length=2127
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosp... 3173 0.0
> AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318752-25322265
REVERSE LENGTH=2185
Length=2185
Score = 3173 bits (1718), Expect = 0.0
Identities = 2008/2141 (94%), Gaps = 47/2141 (2%)
Strand=Plus/Plus
Query 1 AGGGTTACTAATTTTGGAATTTTACTGTCCAAAACGAATC--ATAAAATATCT-AGCTTT 57
|||||||||||||| ||||||||||||||||||||||||| | |||| |||| ||||||
Sbjct 1 AGGGTTACTAATTTGGGAATTTTACTGTCCAAAACGAATCAAAAAAAAAATCTAAGCTTT 60
Query 58 TTGTTCCTTTTGCGGCTTTTTCGACGTCTTCCTTGCACTATCTTCCTTCTATAGCATCAA 117
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 TTGTTCCTTTTGCGGC-TTTTCGTCGTCTTCCTTGCACTATCTTCCTTCTGTAGCATCAA 119
Query 118 TTCGACTCTAAGGTTACGTAGTAGAATTTAAGCGAGAGA-C-A-AGAT-------CA-AA 166
|||| || ||||||||||||||||||||| |||||||| | | |||| || ||
Sbjct 120 TTCGTTTCCAAGGTTACGTAGTAGAATTTACGCGAGAGAGCGAGAGATCAAAAACCATAA 179
Query 167 --A----AAGTTACGATGAGCTCGTATGATCGTAGATTTACTGATCCAAATTCGTATCGC 220
| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CCATCTTAAGTTACAATGAGCTCGTATGATCGTAGATTTGCTGATCCAAATTCGTATCGC 239
Query 221 CAACGCTCTGGCGCCCCAGTTGGTTCGTCTCAGCCGATGGATCCTTCCGCTGCACCATAC 280
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 CAACGCTCTGGCGCCCCAGTTGGTTCGTCTCAGCCGATGGATCCTTCCGCCGCACCATAC 299
Query 281 AACCCACGGTACAGTGGTGGTGGTGGTGGGTATGGACCGTCTCCTGTAATGGCCGGTGAC 340
||||||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 300 AACCCACGGTACACTGGTGGTGGTGGAGGATATGGACCATCTCCGGTAATGGCCGGTGAT 359
Query 341 AATTCCGGATATAATCGGTACCCATCTTTCCAGCCACCTACTGGTGGTTTCTCTGTTGGT 400
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 360 AATTCCGGCTATAATCGGTACCCATCTTTCCAGCCACCTAGTGGCGGTTTCTCTGTTGGC 419
Query 401 CGTGGCGGTGGAAGAGGTGGATACGGTCAATACGGGGAGAGAAGCGGCGGAGGGAATT-- 458
|| || ||||||||||||||||| ||||||||||| || |||| ||||||||||||||
Sbjct 420 CGCGGTGGTGGAAGAGGTGGATATGGTCAATACGGCGATAGAAACGGCGGAGGGAATTGG 479
Query 459 ------GG-GGAGGACGTGGTGGATCGAGTAAAAGAGAGCTAGATAGTGTTTCTCTTCCG 511
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAGGAGGAGGAGGACGTGGCGGATCGAGTAAAAGAGAGCTAGATAGTGTTTCTCTTCCG 539
Query 512 AAGCAGAATTTTGGGAATCTTGTACATTTCGAGAAGAATTTCTACGTGGAGAGTCCCTCT 571
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 540 AAGCAGAATTTTGGGAATCTTGTACATTTTGAGAAGAATTTCTATGTGGAGAGTCCCACT 599
Query 572 GTGCAGGCTATGACGGAGCAGGATGTTGCTATGTACAGAACCGAGAGGGATATATCCGTT 631
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 GTGCAAGCTATGACAGAGCAGGATGTTGCAATGTACAGAACCGAGAGGGATATATCCGTT 659
Query 632 GAAGGTCGTGATGTTCCTAAGCCGGTTAAGTTGTTCCAAGATGCTAATTTTCCAGATAAT 691
|||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||||
Sbjct 660 GAAGGTCGTGATGTTCCTAAGCCGATGAAGATGTTCCAAGATGCTAACTTTCCAGATAAC 719
Query 692 ATCCTCGAAGCAATTGCTAAGTTGGGATTTACTGAGCCAACACCTATACAAGCTCAGGGA 751
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTCTTGAAGCAATTGCTAAATTGGGATTTACTGAGCCAACACCTATACAAGCTCAGGGA 779
Query 752 TGGCCGATGGCGTTGAAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAG 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGCCGATGGCGTTGAAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAG 839
Query 812 ACATTGGCTTACTTGTTACCAGCGTTGGTTCACGTTAGTGCGCAACCTCGATTAGGTCAA 871
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 840 ACATTGGCTTACTTGTTACCAGCATTGGTTCACGTTAGTGCACAACCTCGATTAGGTCAG 899
Query 872 GATGATGGCCCCATCGTGTTAAT-TCTAGCGCCTACGAGAGAACTAGCTGTTCAGATTCA 930
|||||||||||||| |||||||| | |||| || || |||||||||||||||||||||||
Sbjct 900 GATGATGGCCCCATTGTGTTAATAT-TAGCTCCCACAAGAGAACTAGCTGTTCAGATTCA 958
Query 931 AGAGGAATCAAGGAAATTCGGGCTTCGA--TCTGGTGTTAGAAGTACTTGTATCTATGGT 988
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 959 AGAGGAATCAAGGAAATTCGGG-TT-GAGGTCTGGTGTTAGAAGTACTTGTATCTATGGT 1016
Query 989 GGTGCTCCTAAAGGACCTCAGATTCGCGATCTTAGAAGAGGTGTTGAGATTGTAATTGCT 1048
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1017 GGTGCTCCTAAAGGACCTCAGATTCGTGATCTTAGAAGAGGTGTTGAGATTGTAATTGCT 1076
Query 1049 ACACCTGGTCGTTTGATCGATATGTTGGAGTGTCAACACACTAATCTGAAGAGAGTGACT 1108
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1077 ACACCTGGTCGTTTGATTGATATGTTGGAATGTCAACACACTAATTTGAAGAGAGTGACT 1136
Query 1109 TACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGA 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGA 1196
Query 1169 AAGATTGTATCTCAGATCCGACCTGATAGACAAACACTTCTTTGGAGTGCAACATGGCCA 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGATTGTATCTCAGATCCGACCTGATAGACAAACACTTCTTTGGAGTGCAACATGGCCA 1256
Query 1229 CGGGAGGTTGAATCTCTTGCCAGGCAGTTTCTACGAGATCCATATAAGGCCATTATTGGA 1288
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CGAGAGGTTGAAACTCTTGCCAGGCAGTTTCTACGAGATCCATATAAGGCCATTATTGGA 1316
Query 1289 TCAACAGATCTAAAAGCTAACCAGTCTATTAACCAAGTAATCGAGATTGTACCGACGCCA 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TCAACAGATCTAAAAGCTAACCAGTCTATTAACCAAGTAATCGAGATTGTACCGACGCCA 1376
Query 1349 GAGAAATACAACAGGCTCCTTACACTGCTTAAGCAGTTAATGGATGGGAGTAAAATCCTA 1408
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1377 GAGAAATACAACAGGCTCCTTACACTACTTAAACAGTTAATGGATGGGAGTAAAATCCTA 1436
Query 1409 ATATTTGTGGAGACAAAGAGAGGGTGTGATCAAGTGACTAGACAATTGAGAATGGACGGA 1468
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ATTTTTGTGGAGACAAAGAGAGGGTGTGATCAAGTGACTAGACAATTGAGAATGGACGGA 1496
Query 1469 TGGCCAGCTCTTGCCATACATGGTGACAAGACCCAATCGGAAAGGGACCGAGTCTTGGCA 1528
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1497 TGGCCAGCTCTTGCCATACATGGTGACAAGACCCAATCGGAAAGAGACCGAGTCTTGGCA 1556
Query 1529 GAATTTAAGAGTGGACGAAGCCCGATAATGACTGCCACTGATGTAGCAGCAAGGGGACTT 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GAATTTAAGAGTGGACGAAGCCCGATAATGACTGCCACTGATGTAGCAGCAAGGGGACTT 1616
Query 1589 GATGTTAAGGACATAAAATGTGTGGTTAATTATGATTTCCCAAATACCTTGGAGGATTAC 1648
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1617 GATGTGAAGGACATTAAATGTGTGGTTAATTATGATTTCCCAAATACATTGGAGGATTAC 1676
Query 1649 ATCCATAGGATTGGTCGAACTGGGCGTGCAGGAGCTAAAGGAATGGCCTTTACATTCTTC 1708
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ATCCATAGGATTGGTCGAACCGGGCGTGCAGGAGCTAAAGGAATGGCCTTTACATTCTTC 1736
Query 1709 ACACATGACAATGCCAAGTTTGCAAGAGAGCTTATCAAGATCCTTCAAGAAGCTGGTCAA 1768
|||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1737 ACACATGACAATGCTAAGTTTGCGAGAGAGCTTGTCAAGATCCTTCAAGAAGCTGGTCAA 1796
Query 1769 GTTGTACCTCCTACTCTCTCCGCACTAGTCCGGTCATCTGGTTCGGGTTATGGAGGTTCT 1828
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1797 GTTGTACCTCCTACTCTCTCCGCACTAGTCCGATCATCTGGTTCTGGTTATGGAGGTTCA 1856
Query 1829 GGTGGGGGAAGAAACTTCCGGCCAAGAGGAGGAGGACGTGGTGGTGGGTTTGGAGATAAA 1888
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 GGTGGTGGAAGAAACTTCAGGCCAAGAGGAGGAGGACGTGGTGGTGGGTTTGGAGATAAA 1916
Query 1889 CGGTCAAGATCGACTTCAAACTTTGTACCTCACGGTGGAAAGAGGACTTGGTAGAGATAA 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1917 CGGTCAAGATCGACTTCAAACTTTGTACCTCACGGTGGAAAGAGGACTTGGTA-A-A--- 1971
Query 1949 GAGATAATCTCATCATTTTGATTCTCTGAGAAAAGCTTGGATTATGATGATGATGATCAG 2008
|||| | || ||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 1972 GAGA-A-TCCCATCATTTTGATTCTATGAGAAAACCTTTAATTATGATGATGATGATCAG 2029
Query 2009 CGTTTAGTTTCGAGTTGAAGTTCTCTT-TCGTAGAGAACAAAC-TTATACTATTTAACTA 2066
||||| ||||||| | |||||||| || ||||||||||||||| || |||||| ||||||
Sbjct 2030 CGTTTGGTTTCGACTAGAAGTTCT-TTGTCGTAGAGAACAAACATT-TACTATATAACTA 2087
Query 2067 TTTACCTGATTTCGCTTCTTCGTCTTCGTCTTCTTCTTGAT 2107
|||| ||||||||||| |||| ||||| |||||||| ||||
Sbjct 2088 TTTAGCTGATTTCGCTGCTTCTTCTTCTTCTTCTTCATGAT 2128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105471345045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5