BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496497

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63135.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   525    2e-148


> AT5G63135.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25324979-25326479 
REVERSE LENGTH=613
Length=613

 Score =  525 bits (284),  Expect = 2e-148
 Identities = 300/308 (97%), Gaps = 0/308 (0%)
 Strand=Plus/Plus

Query  1    AGAAGAATGTTACAGTTTCCGACGTTGATGATCCAATTTCCGTCGTCGACGAAGACGATT  60
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  34   AGAAGAATGTTACAGTTTCCGACGTTGATGACCCAATTTCCGTCGTCGACGAAGACGATT  93

Query  61   CCGGCATCGTATTTGCTTCCTTTACAATGGCCTCAGCCGCAGAACGAGGAGATTCTTCTC  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  94   CCGGCATCGTATTTGCTTCCGTTACAATGGCCTCAGCCGCAGAACGAGGAGATTCTTCTC  153

Query  121  GCCATGGAAGAAGCCGAGTTCGAAGAAAAGTGCAACGAGATCAGAAAGATGAGTCCTGCT  180
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  154  GCCATGGAAGAAGCTGAGTTCGAAGAAAAGTGCAACGAGATCAGAAAGATGAGTCCTGCT  213

Query  181  TTGCCGGTAATTGGAAAACCAGTCGTCGACAACCAACAAGAAGAGGACGATAATGAAGCA  240
            || |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct  214  TTACCGGTAATTGGAAAACCAGTCGTCAACAACGAACAAGAAGAGGATGATAATGAAGCA  273

Query  241  GAGGATGATGATGCAGACAATGCAGAGGAATCAGATGGTGAAGAGTTTGAGCAAGAAACC  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  GAGGATGATGATGCAGATAATGCAGAGGAATCAGATGGTGAAGAGTTTGAGCAAGAAACC  333

Query  301  GGATAAAT  308
            ||||||||
Sbjct  334  GGATAAAT  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5