BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496499
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 929 0.0
> AT5G63150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1713, mitochondria
(InterPro:IPR013177); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr5:25330189-25330844 FORWARD
LENGTH=656
Length=656
Score = 929 bits (503), Expect = 0.0
Identities = 601/647 (93%), Gaps = 11/647 (2%)
Strand=Plus/Plus
Query 1 GTGTTTGACGAGATTTTGGTTTCTTAGGG-TTTTGATCTCTGCAATGGCGAATCTAATGC 59
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 12 GTGTTTGACGAGCTTTTGGTTTCTTAGGGTTTTTGATCTCTGCAATGGCGAATCTAATTC 71
Query 60 ATAGATTCTTCAAGAACAACAAGTCTTGCTTCAATTCAATCCAAAGGCTTACTACTACTC 119
||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 CTAGATTCCTC-AG--GAACAAGTCTTGCTTCAATTCAATCCAAAGGCTTACTACTACTC 128
Query 120 CGTCTCTCTTCACATACCAGAAG-CC--CTTCATCAACAACAACAACATCGAATCTATTA 176
| ||||||||||| ||||||||| || ||||| |||||||||||||||||| ||| |||
Sbjct 129 CTTCTCTCTTCACTTACCAGAAGCCCTACTTCAACAACAACAACAACATCGACTCTGTTA 188
Query 177 TTCAGAAACCCGATCCAGTTTCTTTTGCTAATCCTTTGATTACACTCTCCGGGAATGAAT 236
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 189 TTGAGAAACCCGATCCAGTTTCTTTTACTAATCCTTTGATTACACTCTCCGGGAATGAAT 248
Query 237 TCAATCAACCTATGCAGTTTTACCCTAGTTTCTCCATGGGTTTATGCTTGAATCCCAAAA 296
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 249 CCAATCAACCTATGCGGTTTTACCCTAGTTTCTCCATGGGGTTATGCTTGAATCCCAAAA 308
Query 297 TGATTCAAGGTCTGGATCTAGCTGAAACAACGTC-TT--TGGTGGAGGAAGAGGATGCGA 353
||||||||||||||||||||||||||||| |||| || || ||||||||||||| |||
Sbjct 309 TGATTCAAGGTCTGGATCTAGCTGAAACAGCGTCGTTGGAGGAGGAGGAAGAGGATACGA 368
Query 354 AGGAGATCGTGATTTACGCTGATAGTGTgaagaagaagaggaagaagaagaTGAACAAGC 413
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 AGGAGATTGTGATTTACGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGC 428
Query 414 ACAAGTATAGGAAACTCAGGAAACAGCTTGGTCGCAAGTCGTAGAtttttttGACTATTC 473
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 429 ACAAGTATAGGAAACTCAGGAAACAGCTTGGTCGCAAGTCATAGATTTTTTTTACTATTC 488
Query 474 CGGTGAGAAGTTTGCTCCTTTTATTTCTTCTGAATGACTGAGATTCAAAGGATGAACCTT 533
||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||
Sbjct 489 CGGTGAGAAGTTTGCTCCTTTCATGTCTTCTGAATTACTGGGATTCAAAGGATGAACCTT 548
Query 534 TTTC-TTGAATTAGAACAAAAAGTTTCTATATTCCATTGAATTGTCATTAGTCTGTGTTC 592
||| |||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 549 TTTTATTGAATCAGAACAAAAAATTTCTAAATTCCATTGCATTGTCATTAGTCTGTGTTC 608
Query 593 ATCGTTTGTTTTGCCAACACATTTCTAATAAAACTTTTGCGCAATTC 639
||||||||| ||| |||||||||||||||||||| ||||| ||||||
Sbjct 609 ATCGTTTGTCTTGACAACACATTTCTAATAAAACGTTTGCTCAATTC 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5