BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496503
Length=2501
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63190.1 | Symbols: | MA3 domain-containing protein | chr5:... 3735 0.0
AT5G63195.1 | Symbols: | other RNA | chr5:25346729-25348386 RE... 1443 0.0
> AT5G63190.1 | Symbols: | MA3 domain-containing protein | chr5:25345542-25348796
FORWARD LENGTH=2603
Length=2603
Score = 3735 bits (2022), Expect = 0.0
Identities = 2306/2440 (95%), Gaps = 32/2440 (1%)
Strand=Plus/Plus
Query 79 GTTTTT-TCCGGTGCTGGAGATCCGATTCCTTATCTTTCCTGTCTTGGCTCGAGATCCGA 137
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 141 GTTTTTCTCCGGTGCTGGAGATCCGATTCCTTATCTTTTCTGTCTTGGCTCGAGATCCGA 200
Query 138 GCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAA-TTGTATTCTTGCGATCAC 196
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 201 GCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTG-ATTCCTGCGATCAC 259
Query 197 AGGTATGATGGCATCGGGTGAGGGAATTTTGACTGATGGACAGTGGAAAAAGCTTGAAAT 256
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 260 ----A-GATGGCATCGGGTGAGGGAATTTTGACGGATGGACAGTGGAAAAAGCTTGAAAT 314
Query 257 AGCAACTCAGAATTCTGGAAGTTTGTCATCATCGCCCAAATCTCATACTCTGTTTGCTGA 316
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 315 AGCAACTCATAATTCTGGAAGTTTGTCATCATCGCCTAAATCTCATACTCTCTTTGCTGA 374
Query 317 TTTGAACATTAAGTCTCCCACTGGTGGCAAAGGACCAGTAGCTGGGTTTCCAAATAGGCA 376
| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 375 TCTGAACATTAAGTCTCCCACTGGTGGCAAAGGACCAGTTGCTGGGATTCCTAATAGGCA 434
Query 377 TGTACGACGGACTCATTCTGGGAAGCATATCCGTGTAAAGAAGGATGGTGCTGGTGGAAA 436
||| ||||| ||||| || ||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 435 TGTGCGACGTACTCACTCAGGGAAGCATATTCGTGTTAAGAAGGAGGGTGCTGGTGGCAA 494
Query 437 AGGAACTTGGGGAAAGCTTCTTGACACTGATGAGGGTGACTCCTGTATTGACAAGAATGA 496
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 495 AGGAACTTGGGGAAAGCTTCTTGACACTGATGATGGTGACTCCTGTATTGATAAGAATGA 554
Query 497 TCCCAATTACGATAGCGGAGAGGACGCATATGATGGACTTGTTGATTCACCTGTATCAGA 556
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 555 TCCCAATTACGATAGTGGAGAGGACGCATATGATGGACTTGTTGATTCACCGGTATCAGA 614
Query 557 CCCGTTGGATGATTACAAAAAGGCTGTAGTTTCCATCATTGAGGAATACTTTAGCACCGG 616
||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 615 CCCGTTGAATGATTACAAAAAGTCAGTAGTTTCCATCATTGACGAATACTTTAGCACCGG 674
Query 617 GGATGTGAAAGTGGCGGCATCTGACCTCAGGGAACTTGGTTCAAGTGAATATCATCCTTA 676
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 675 GGATGTGAAAGTGGCGGCATCTGACCTCAGGGAACTTGGTTCAAGCGAATATCATCCTTA 734
Query 677 CTTCACCAAGCGACTTGTTTCTATGGCTATGGACAGGCACGATAAGGAGAAGGAAATGGC 736
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 735 CTTCACCAAGCGACTTGTTTCTATGGCCATGGACAGACACGATAAGGAGAAGGAAATGGC 794
Query 737 TTCGGTGCTACTCTCTGCATTGTATGCGGATGTCATTTTACCTGATCAAATTAGGGATGG 796
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 795 TTCAGTGCTACTCTCTGCATTGTATGCTGATGTTATTTTACCTGATCAAATTAGGGATGG 854
Query 797 ATTTATTAGACTTCTCAGATCTGTTGATGACCTTGCTGTGGACATCCTTGATGCTGTTAA 856
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 855 ATTTATAAGACTTCTCAGATCTGTTGATGACCTTGCGGTGGACATCCTTGATGCTGTTAA 914
Query 857 TGTCCTTGCATTGTTTATTGCACGGGCCATCGTTGACGAAATTCTCCCCCCGATTTTCCT 916
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 915 TGTCCTTGCATTGTTTATTGCACGGGCCATCGTTGACGAAATTCTCCCTCCGGTTTTTCT 974
Query 917 GGCTAGATCTAAGAAGATACTTCCAGAATCTTCCAAAGGGTTTCAGGTAATTGTAACTGC 976
|| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 975 GGTTAGATCTAAGAAGATTCTTCCAGAATCTTGCAAAGGGTTTCAGGTTATTGTAACTGC 1034
Query 977 AGAAAAGAGCTATCTCTCAGCTCCTCACCATGCAGAATTAGTGGAGAAGAAATGGGGAGG 1036
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1035 AGAAAAGAGCTATCTCTCAGCTCCTCACCATGCAGAACTAGTGGAGAAGAAATGGGGAGG 1094
Query 1037 TAGCACTCACACTACAGTAGAAGAAACAAAGAAAAAGATATCTGAAATCTTGAAGGAATA 1096
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1095 TAGTACTCACACTACAGTAGAAGAAACGAAGAAAAAGATATCTGAAATCTTGAAGGAATA 1154
Query 1097 TGTGGAAAACGGAGACACTTACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTT 1156
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CGTGGAAAACGGAGACACTTACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTT 1214
Query 1157 TTTCCATCACGAGGTCGTGAAGAGGGCTTTGGTTCTGGCTATGGAATCTCAAACCTCTGA 1216
||||||||| ||||| ||||||||||||||||||||||| ||||| |||| |||| ||||
Sbjct 1215 TTTCCATCATGAGGTTGTGAAGAGGGCTTTGGTTCTGGCGATGGATTCTCCAACCGCTGA 1274
Query 1217 GCCACTTATACTAAAGTTGTTGAACGAAGCTGCTGAAGAAGGTCTGATCAGTTCAAGTCA 1276
| ||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct 1275 GTCACTTGTACTAAAGCTGTTGAAGGAAACTGCTGAAGAAGGACTGATCAGTTCGAGTCA 1334
Query 1277 AATGGTGAAGGGATTCTTCCGAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCC 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 AATGGTGAAGGGATTCTTCCGAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCC 1394
Query 1337 ATCGGCCAAAAAGCTGTTTGATTCGATAGTTCCAAAGGCTATCTCTGGAGGCTGGCTCGA 1396
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1395 ATCTGCCAAAAAGCTGTTTGATTCGATAGTTCCAAAGGCTATTTCTGGAGGCTGGCTCGA 1454
Query 1397 TGATTCATTTAAGGTTACCTCTGATCAAGATGGAGGGAAATCGAGTCAAGACGGAAAGCT 1456
||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1455 TGATTCATTTAAGATAACCTCTGATCAAGATGGAGAAAAATCGAGTCAAGACGGAAAGCT 1514
Query 1457 AAGACAGTACAAGAAGGATACAGTGAACATAATTCAGGAATATTTCTTATCAGATGACAT 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 AAGACAGTACAAGAAGGATACAGTGAACATAATTCAGGAATATTTCTTATCAGATGACAT 1574
Query 1517 TCCTGAGCTAATCCGCAGTCTTCAAGATTTAGGGACACCTGAATATAACCCGGTATTTCT 1576
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1575 TCCTGAGCTAATCCGCAGTCTTCAAGATTTAGGGGCACCTGAATATAACCCGGTGTTTCT 1634
Query 1577 GAAGAGGCTCATAACTCTTGCTCTAGATAGGAAAAACAGAGAAAAGGAAATGGCTTCGGT 1636
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1635 GAAGAGGCTCATAACTCTTGCTCTAGACAGGAAAAACAGAGAAAAGGAAATGGCTTCGGT 1694
Query 1637 TCTTCTTTCTGCTCTACACATGGAGTTATTCTCAACCGAAGATTTCATAAACGGCTTCAT 1696
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 1695 TCTTCTTTCTGCTCTTCACATGGAGCTATTCTCAACTGAAGATTTCATAAACGGTTTCAT 1754
Query 1697 TATGCTCCTGGAATCCGCAGAAGACACAGCTTTAGACATCATGGACGCATCAAACGAACT 1756
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1755 TATGCTCCTGGAATCGGCAGAAGACACAGCTTTAGATATCATGGACGCATCAAACGAACT 1814
Query 1757 TGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTTTTAGCTCCACTTAACCTTGAAGA 1816
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1815 TGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTCTTAGCTCCACTTAACCTTGAAGA 1874
Query 1817 GATCTCAACAAAGCTACCTCCAAAATCAACCGGAACCGAAACAGTCCGCTCAGCCAGGTC 1876
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TATCTCAACCAAGCTGCCTCCAAAATCAACCGGAACCGAAACAGTCCGCTCAGCCAGGTC 1934
Query 1877 TCTTATCTCTGCCAGACACGCAGGAGAGAGACTCCTGAGAAGCTGGGGCGGTGGAACAGG 1936
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1935 TCTTATCTCCGCCAGACACGCAGGAGAGAGACTCCTAAGAAGCTGGGGAGGTGGAACCGG 1994
Query 1937 CTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAACTTTTAGAAGAATACGAAACAGG 1996
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1995 CTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAACTCCTAGAAGAATACGAAACAGG 2054
Query 1997 AGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATCTAGGGATGCCGTTTTTCAACCA 2056
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2055 AGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATCTAGGGATGCCTTTTTTCAACCA 2114
Query 2057 CGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGAAGCAGAATGATCGGTTACTGAA 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 CGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGAAGCAGAATGATCGGTTACTGAA 2174
Query 2117 TCTACTTGAGGAGTGTTTTGGTGAAGGGTTGATTACGACTAACCAAATGACGAAAGGGTT 2176
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2175 TCTGCTTGAGGAGTGTTTTGGTGAAGGATTGATTACAACTAACCAAATGACGAAAGGGTT 2234
Query 2177 TGGTCGCGTTAAAGACAGCCTCGATGACTTGTCGCTTGATATACCGAACGCGAAAGAGAA 2236
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 TGGTCGTGTTAACGACAGCCTCGATGACTTGTCGCTTGATATACCGAACGCGAAAGAGAA 2294
Query 2237 GTTTGAGTTGTATGCTAGTCATGCCATGGACAATGGTTGGATCCTTCCTGAGTTTGGGAT 2296
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2295 GTTTGAGCTGTATGCTAGTCATGCCATGGACAATGGTTGGATCCTTCCCGAGTTTGGGAT 2354
Query 2297 TTCTGCGACTCAGTGATGACTGATTCTCTTATCAGTTTCTTATGTTTGTGTAAGCTTACG 2356
|||||| |||||||||| | || |||||||||||||||||| |||||||| ||||||
Sbjct 2355 TTCTGCAACTCAGTGATTAGTGGTTCTCTTATCAGTTTCTTGTGTTTGTG----CTTACG 2410
Query 2357 ATGGTTTCCTCACTTTCta--tatat--at--at--a-t--G--GATAAACATGAGATGT 2403
|| |||||||||| |||| ||||| || || | | | ||||||||||||||||
Sbjct 2411 ATACTTTCCTCACTATCTACATATATGTATGGATTCAGTTAGTAGATAAACATGAGATGT 2470
Query 2404 TTATAAT-TTCATGTGTTTC-GCTCTTGTTTATTTGTGTTTTGTCTTTGTACTGATATCT 2461
||||| | |||||||||||| | ||| ||| || |||||||||||||||||||||||||
Sbjct 2471 TTATA-TGTTCATGTGTTTCTG-TCTGGTTG-TT-GTGTTTTGTCTTTGTACTGATATCT 2526
Query 2462 TTTAGTGTGTTCTAATTTTCTGATGGATTTTCGTTACATT 2501
|||||||||||||||||| |||||||||||| ||||||||
Sbjct 2527 TTTAGTGTGTTCTAATTT-CTGATGGATTTTTGTTACATT 2565
Score = 137 bits (74), Expect = 4e-31
Identities = 79/81 (98%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 1 TTT-TTGGCGATCCTCATCCATTTCCTCTCTCGTCGTTGTCTGGGAATCGGTGACTTTTT 59
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 TTTATTGGCGATCCTCATCCATTTCCTCTCTCGTCGTTGTCTGGGAATCGGTGACTTTT- 78
Query 60 GAATCTTTGCGACTCTCTTGT 80
|||||||||||||||||||||
Sbjct 79 GAATCTTTGCGACTCTCTTGT 99
> AT5G63195.1 | Symbols: | other RNA | chr5:25346729-25348386
REVERSE LENGTH=1520
Length=1520
Score = 1443 bits (781), Expect = 0.0
Identities = 863/904 (95%), Gaps = 0/904 (0%)
Strand=Plus/Minus
Query 517 AGGACGCATATGATGGACTTGTTGATTCACCTGTATCAGACCCGTTGGATGATTACAAAA 576
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1481 AGGACGCATATGATGGACTTGTTGATTCACCGGTATCAGACCCGTTGAATGATTACAAAA 1422
Query 577 AGGCTGTAGTTTCCATCATTGAGGAATACTTTAGCACCGGGGATGTGAAAGTGGCGGCAT 636
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1421 AGTCAGTAGTTTCCATCATTGACGAATACTTTAGCACCGGGGATGTGAAAGTGGCGGCAT 1362
Query 637 CTGACCTCAGGGAACTTGGTTCAAGTGAATATCATCCTTACTTCACCAAGCGACTTGTTT 696
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1361 CTGACCTCAGGGAACTTGGTTCAAGCGAATATCATCCTTACTTCACCAAGCGACTTGTTT 1302
Query 697 CTATGGCTATGGACAGGCACGATAAGGAGAAGGAAATGGCTTCGGTGCTACTCTCTGCAT 756
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1301 CTATGGCCATGGACAGACACGATAAGGAGAAGGAAATGGCTTCAGTGCTACTCTCTGCAT 1242
Query 757 TGTATGCGGATGTCATTTTACCTGATCAAATTAGGGATGGATTTATTAGACTTCTCAGAT 816
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1241 TGTATGCTGATGTTATTTTACCTGATCAAATTAGGGATGGATTTATAAGACTTCTCAGAT 1182
Query 817 CTGTTGATGACCTTGCTGTGGACATCCTTGATGCTGTTAATGTCCTTGCATTGTTTATTG 876
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CTGTTGATGACCTTGCGGTGGACATCCTTGATGCTGTTAATGTCCTTGCATTGTTTATTG 1122
Query 877 CACGGGCCATCGTTGACGAAATTCTCCCCCCGATTTTCCTGGCTAGATCTAAGAAGATAC 936
|||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||| |
Sbjct 1121 CACGGGCCATCGTTGACGAAATTCTCCCTCCGGTTTTTCTGGTTAGATCTAAGAAGATTC 1062
Query 937 TTCCAGAATCTTCCAAAGGGTTTCAGGTAATTGTAACTGCAGAAAAGAGCTATCTCTCAG 996
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1061 TTCCAGAATCTTGCAAAGGGTTTCAGGTTATTGTAACTGCAGAAAAGAGCTATCTCTCAG 1002
Query 997 CTCCTCACCATGCAGAATTAGTGGAGAAGAAATGGGGAGGTAGCACTCACACTACAGTAG 1056
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1001 CTCCTCACCATGCAGAACTAGTGGAGAAGAAATGGGGAGGTAGTACTCACACTACAGTAG 942
Query 1057 AAGAAACAAAGAAAAAGATATCTGAAATCTTGAAGGAATATGTGGAAAACGGAGACACTT 1116
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 941 AAGAAACGAAGAAAAAGATATCTGAAATCTTGAAGGAATACGTGGAAAACGGAGACACTT 882
Query 1117 ACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTTTTTCCATCACGAGGTCGTGA 1176
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 881 ACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTTTTTCCATCATGAGGTTGTGA 822
Query 1177 AGAGGGCTTTGGTTCTGGCTATGGAATCTCAAACCTCTGAGCCACTTATACTAAAGTTGT 1236
||||||||||||||||||| ||||| |||| |||| ||||| ||||| |||||||| |||
Sbjct 821 AGAGGGCTTTGGTTCTGGCGATGGATTCTCCAACCGCTGAGTCACTTGTACTAAAGCTGT 762
Query 1237 TGAACGAAGCTGCTGAAGAAGGTCTGATCAGTTCAAGTCAAATGGTGAAGGGATTCTTCC 1296
|||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 761 TGAAGGAAACTGCTGAAGAAGGACTGATCAGTTCGAGTCAAATGGTGAAGGGATTCTTCC 702
Query 1297 GAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCCATCGGCCAAAAAGCTGTTTG 1356
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 701 GAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCCATCTGCCAAAAAGCTGTTTG 642
Query 1357 ATTCGATAGTTCCAAAGGCTATCTCTGGAGGCTGGCTCGATGATTCATTTAAGGTTACCT 1416
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 641 ATTCGATAGTTCCAAAGGCTATTTCTGGAGGCTGGCTCGATGATTCATTTAAGATAACCT 582
Query 1417 CTGA 1420
||||
Sbjct 581 CTGA 578
Score = 963 bits (521), Expect = 0.0
Identities = 561/581 (97%), Gaps = 0/581 (0%)
Strand=Plus/Minus
Query 1555 CTGAATATAACCCGGTATTTCTGAAGAGGCTCATAACTCTTGCTCTAGATAGGAAAAACA 1614
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 581 CTGAATATAACCCGGTGTTTCTGAAGAGGCTCATAACTCTTGCTCTAGACAGGAAAAACA 522
Query 1615 GAGAAAAGGAAATGGCTTCGGTTCTTCTTTCTGCTCTACACATGGAGTTATTCTCAACCG 1674
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 521 GAGAAAAGGAAATGGCTTCGGTTCTTCTTTCTGCTCTTCACATGGAGCTATTCTCAACTG 462
Query 1675 AAGATTTCATAAACGGCTTCATTATGCTCCTGGAATCCGCAGAAGACACAGCTTTAGACA 1734
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 461 AAGATTTCATAAACGGTTTCATTATGCTCCTGGAATCGGCAGAAGACACAGCTTTAGATA 402
Query 1735 TCATGGACGCATCAAACGAACTTGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTTT 1794
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 TCATGGACGCATCAAACGAACTTGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTCT 342
Query 1795 TAGCTCCACTTAACCTTGAAGAGATCTCAACAAAGCTACCTCCAAAATCAACCGGAACCG 1854
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 341 TAGCTCCACTTAACCTTGAAGATATCTCAACCAAGCTGCCTCCAAAATCAACCGGAACCG 282
Query 1855 AAACAGTCCGCTCAGCCAGGTCTCTTATCTCTGCCAGACACGCAGGAGAGAGACTCCTGA 1914
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 281 AAACAGTCCGCTCAGCCAGGTCTCTTATCTCCGCCAGACACGCAGGAGAGAGACTCCTAA 222
Query 1915 GAAGCTGGGGCGGTGGAACAGGCTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAAC 1974
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GAAGCTGGGGAGGTGGAACCGGCTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAAC 162
Query 1975 TTTTAGAAGAATACGAAACAGGAGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATC 2034
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TCCTAGAAGAATACGAAACAGGAGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATC 102
Query 2035 TAGGGATGCCGTTTTTCAACCACGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGA 2094
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TAGGGATGCCTTTTTTCAACCACGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGA 42
Query 2095 AGCAGAATGATCGGTTACTGAATCTACTTGAGGAGTGTTTT 2135
||||||||||||||||||||||||| |||||||||||||||
Sbjct 41 AGCAGAATGATCGGTTACTGAATCTGCTTGAGGAGTGTTTT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124113016982
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5