BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496506
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63220.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 2004 0.0
> AT5G63220.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317);
Has 304 Blast hits to 301 proteins in 161 species:
Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants
- 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
| chr5:25353034-25355500 REVERSE LENGTH=1287
Length=1287
Score = 2004 bits (1085), Expect = 0.0
Identities = 1182/1229 (96%), Gaps = 5/1229 (0%)
Strand=Plus/Plus
Query 32 AGATTTGAAGAAGAAAACATCAAAACCTTGAGATCCATGTCTCGAGAGAGGATCAAACGT 91
||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 55 AGATTTGAAGAAGAAAACAACAAATCCTTGAGATCCATGTCGAGAGAGAGGATCAAACGT 114
Query 92 GAATTACCTCCCGTTCAAGAGCATATTGATAAATTGCGGAAAGTGGTAGAGGAAGGCAAT 151
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 115 GAATTACCTCCTGTTCAAGAGCATATTGATAAATTGCGGAAAGTGATAGAGGAAGGCAAT 174
Query 152 TACTATGGAGCTTTGCAGATGTATAAATCTATCAGTGCAAGATATGTCACGGCTCAGAGA 211
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 175 TACTATGGAGCTTTGCAGATGTATAAATCTATCAGTGCAAGATATGTCACCGCTCAAAGA 234
Query 212 TTCTCTGAAGCTCTTGATATCCTCTTTTCAGGGGCTTGCATTGAACTAGAACACGGCCTG 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTCTCTGAAGCTCTTGATATCCTCTTTTCAGGGGCTTGCATTGAACTAGAACACGGCCTG 294
Query 272 GTGAATTGTGGGGCGGACCTCGCTATTTTGTTTGTCGACACACTAGTTAAAGCCAAGTCT 331
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 295 GTGAATTGTGGGGCGGACCTAGCTATTTTGTTTGTTGACACACTAGTTAAAGCCAAATCT 354
Query 332 CCTTGCAACGATGAAGCTCTTGATCGTATCAGGTGTATTTTCAAATTGTTTCCTCGGGTT 391
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CCTTGCAACGATGAAACTCTTGATCGTATCAGGTGTATTTTCAAATTGTTTCCTCGGGTT 414
Query 392 CCTGTACCACCTCATTTGGTAGATGTGAGTGACGATGAAGATGTCCAAAATCTTCAAGAA 451
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 415 CCTGTACCACCTCATTTGGTAGATGTGAGTGACGATGAAGATGTTCAAAATCTTCAAGAA 474
Query 452 TCTCTTGGGGAGGCCAGATCACGAGTAGAAAACTTGACTTCGTTCTTGAGAGCTGCTATA 511
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCTCTTGGGGAAGCCAGATCACGAGTAGAAAACTTGACTTCGTTCTTGAGAGCTGCTATC 534
Query 512 AAATGGTCTGCAGAGTTTGGAGGCCCACCTACTGGCTATCCTGAGTTGCATGCTATGCTG 571
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 535 AAATGGTCTGCAGAATTTGGAGGCCCACGTACTGGCTATCCTGAGTTGCATGCTATGCTG 594
Query 572 GGTGATTATCTCTACACCGAGTGTCCTGAACTTGATATGGTCCGGATATCCCGACATTTT 631
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGTGATTATCTCTACACTGAGTGTCCTGAACTTGATATGGTCCGGATATCCCGACATTTT 654
Query 632 GTTAGAGCTGAGGACCCTGAGAAGTTTGCATCTATGCTGATCAACTTTATGGGAAGGTGT 691
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 655 GTTAGAGCTGAGGACCCCGAGAAATTTGCATCTATGCTGGTCAACTTTATGGGAAGGTGT 714
Query 692 TATCCCGGAGAAGATGACCTCGCAATCGCACGAGCAGTTCTCATGTACTTATCTATGGGT 751
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 715 TATCCCGGAGAAGATGACCTCGCAATTGCACGAGCAGTTCTCATGTATTTATCCATGGGT 774
Query 752 AACATGAAAGATGCAAACTTTATGATGGATGAGATTAAGAAACAAGCGGAGACAAAAAAT 811
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 AACATGAAAGATGCAAACTTTATGATGGATGAGATTAAGAAACAAGCAGAGACAAAAAAT 834
Query 812 CCCGAGCTTTCAGAATCAGACCTTATCCAATTTATCTCATATCTTCTGGAAACGTTGCAG 871
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CCTGAGCTTTCAGAATCGGACCTTATCCAATTTATCTCATATCTTCTGGAAACGTTGCAG 894
Query 872 AGGGATGCATTACCTCTTTTCAATATGTTAAGAGTAAAATATAAGTCAAGCATAGATAGG 931
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGGGATGCATTACCTCTTTTCAATATGTTAAGAGTAAAATATAAGTCAAGCATAGATAGA 954
Query 932 GACCAGCTGCTTAACGAGTTGCTGGACGAGATTGCAGAGAAGTTTTACGGGGTGCAGCGT 991
|| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 955 GATCAGCTGCTTAACGAGTTGCTGGACGAGATTGCAGAGAGGTTTTATGGTGTGCAGCGT 1014
Query 992 AAGAATCCTTTGCAAGGAATGTTTGGAGACATCTTCAAGATGATGGGCTGAGGAAGGAGT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAGAATCCTTTGCAAGGAATGTTTGGAGACATCTTCAAGATGATGGGCTGAGGAAGGAGT 1074
Query 1052 TTGAAGAAACAAGAATACtttttttG-TTTTCCTTTCTGATTTGTATTTGGCAATGTACT 1110
||||||| | | | ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1075 TTGAAGAGTGA-GT-T-CTTTTTTTGGTTTTCCTTTCTGATTTGTATTTGGCAACGTACT 1131
Query 1111 TAATAATGGATAGCTCTGGAGAATTCTCCAGATCATAAGTTATATCTCTTTTCCTCAAGT 1170
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1132 -AATAATGGATAGCTCTGGGGAATTCTCCAGATCATAAGTTATTTCTCTTTTCCTCAAGT 1190
Query 1171 GGGTGAAAGAGTTTTGTTCTTTGTAACATTTTACATTTGTTTGTCTTTACTATATTAATT 1230
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GGGTGAAACAGTTTTGTTCTTTGTAACATTTTACATTTGTTTGTCTTTACTATATTAATT 1250
Query 1231 CAGGATATATAAAAATTAAACTTCAATTT 1259
||||||| ||| |||||||||||||||||
Sbjct 1251 CAGGATAGATACAAATTAAACTTCAATTT 1279
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 AGTTTCCGTACTTGGGATAATTTATCAATCT 31
|||||||||||||||||||||||||||||||
Sbjct 1 AGTTTCCGTACTTGGGATAATTTATCAATCT 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5