BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496508

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63240.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   623    5e-178


> AT5G63240.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr5:25358968-25359565 REVERSE LENGTH=598
Length=598

 Score =  623 bits (337),  Expect = 5e-178
 Identities = 422/462 (91%), Gaps = 10/462 (2%)
 Strand=Plus/Plus

Query  1    ATAATGGTCACAAAAAC-GATATCTCTACCATTGACGCTCTTCTTCTTCCTCCTCGTATC  59
            ||||||||||| ||||| ||| |||||| ||||||||||| ||||| |||||||||||||
Sbjct  124  ATAATGGTCAC-AAAACTGATGTCTCTATCATTGACGCTCATCTTCGTCCTCCTCGTATC  182

Query  60   CACCGTATCTGTGAACGCCACACTAAGAAACCTCTCGCGGGCGGCTGAAAACAAAGGAGT  119
             |||||||| |||||| | |||| |||||||||||||| ||| |||||||||||||||||
Sbjct  183  TACCGTATCCGTGAACTCGACACCAAGAAACCTCTCGCAGGCTGCTGAAAACAAAGGAGT  242

Query  120  ATGGTGCATAGCGAATGACAAAGGGACAGATAAGCAATTACAAGCGAATATAGATTGGGT  179
            |||||||||||||  |||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct  243  ATGGTGCATAGCGGGTGACAAAGCGACAGATAAGCAACTGCAAGCGAATATAGATTGGGT  302

Query  180  TTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGATCAATCCCGGTGGACCTTGCTT  239
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  303  TTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGCTCAATTCCGGTGGACCTTGCTT  362

Query  240  TGAACCAAACACGGTAAGAGACCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACCT  299
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  363  TGAACCAAACACGGTAAGAGATCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACCT  422

Query  300  TGGTGCCACCAAGGCACAATGCAATTTCCATAACACTGGCATTGAAGTTTATACCGACCC  359
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  423  TGGTGCCACCAAGGAACAATGCAATTTCCATAACACTGGCATTGAAGTTTCTACCGACCC  482

Query  360  AAGCCATGGCTCGTGTGTATACGTATCTTATTAGCATTTTAATTTCCGGTTAACATGTAT  419
            |||||||||||||||| | | ||||||||||||| ||| ||||| ||| ||    | |||
Sbjct  483  AAGCCATGGCTCGTGTATTTTCGTATCTTATTAGAATTCTAATT-CCGCTT----T-TAT  536

Query  420  GTGTGGGAACTTGTTTGGCCGAAACTCCAGTTAAATAAGTTG  461
            ||| || ||||||||  ||| |||||||||||||||||||||
Sbjct  537  GTG-GG-AACTTGTTAAGCCTAAACTCCAGTTAAATAAGTTG  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5