BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496509
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63260.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1866 0.0
> AT5G63260.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:25361747-25364769 FORWARD LENGTH=1825
Length=1825
Score = 1866 bits (1010), Expect = 0.0
Identities = 1119/1172 (95%), Gaps = 6/1172 (1%)
Strand=Plus/Plus
Query 467 ATTGGTAGGGAGAAAGTAAGGGAAAGAGACGAGGATGTGGAGAATCCAAAGCTGATGGAG 526
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 ATTGGTAGGGAGAGAGTAAGGGAAAGAGACGAGGATGTGGAGAACCCAAAGCTGATGGAG 660
Query 527 TGTAAGTACTACTTCAGGACTGGAGGGTGCAAATATGGAGAGTCTTGTAGATTCAGCCAC 586
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTAAGTACTACTTTAGGACTGGAGGGTGCAAATATGGAGAGTCTTGTAGATTCAGCCAC 720
Query 587 ATGAAAGAACATACTTCTCTGGCCTCAGGACCAGAGCTTAACTTCCTTGGCCTTCCTATC 646
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 721 ATGAAAGAACATAATTCTCCGGCCTCAGTACCAGAGCTTAACTTCCTTGGCCTTCCTATC 780
Query 647 AGACCGGGAGAGAAAGAATGCCTTTTCTACATGCGCAATGGCTCCTGCAAGTTTGGATCT 706
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 AGACCGGGAGAGAAAGAATGCCCGTTCTACATGCGCAATGGCTCCTGCAAGTTTGGATCA 840
Query 707 GACTGCAAATTTAATCATCCTGACCCTACGGCTATCGGAGGAGTTGATTCTCCCTTGTTC 766
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 841 GACTGCAAATTTAATCATCCTGATCCTACAGCTATCGGAGGAGTTGATTCTCCCTTGTAC 900
Query 767 CGTGGTAATAACGGTGGACCCTTTTCCCCAAAGGCCCCATCCCAAGCAAGTTCAACTTCT 826
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGTGGTAATAACGGTGGATCCTTTTCCCCAAAGGCCCCATCCCAAGCAAGTTCAACTTCT 960
Query 827 TGGTCTTCAACGAGACATATGAATGGTACTGGTACTGCTCCTTTTATTCCAGCCATGTTC 886
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 961 TGGTCTTCAACGAGACATATGAATGGTACTGGTACTGCTCCTTTTATTCCATCCATGTTC 1020
Query 887 CCCCATAATCGTGGAGTTTCACCTCAAGCTCCAGAGTGGAATGGGTATCAGGCGTCTTCT 946
||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1021 CCCCATAGTCGTGGAGTTACACCTCAAGCTTCAGACTGGAATGGGTATCAGGCGTCTTCT 1080
Query 947 GCCTATCCACCAGAAAGGAGTGTGCTTGCTCCTTCCACATACCCCGTGAACAATTCATTG 1006
||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 1081 GCCTATCCACCAGAAAGGAGTCCACTTGCTCCTTCCTCATACCAGGTGAACAATTCATTG 1140
Query 1007 GCTGAAACTAGTTCATTCTCACAATACCAACACCAGATGCCTGGTGAGGAATTCCCAGAA 1066
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1141 GCTGAAACTAGTTCATTCTCACAATACCAACACCAGATGTCTGTTGAGGAATTCCCAGAA 1200
Query 1067 CGCCCGGATCAACCAGAGTGCACTTATTATCTTAAAACTGGGGACTGTAAGTTCAAATAT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CGCCCGGATCAACCAGAGTGCACTTATTATCTTAAAACTGGGGACTGTAAGTTCAAATAT 1260
Query 1127 AAATGCAAATACCATCATCCGAAAAATAGATTGCCAAAGCAAGCTCCATTCTCTTTCAAT 1186
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1261 AAATGCAAATACCATCATCCGAAAAATAGATTGCCGAAGCAAGCTGCATTCTCTTTCAAT 1320
Query 1187 GACAAGGGCTTGCCCCTAAGACCTGATCAGAGTATGTGCACACACTACAGCCGATATGGC 1246
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1321 GACAAGGGCTTGCCCCTAAGACCTGATCAGAGCATGTGCACACACTACAGCCGATATGGC 1380
Query 1247 ATCTGCAAATTTGGTCCAGCTTGTAGATTTGATCATTCCATACCGCCTACATTCTCGCCC 1306
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1381 ATCTGCAAATTTGGTCCAGCTTGTAGATTTGATCATTCCATACCGCCCACATTCTCGCCC 1440
Query 1307 AGTAGCTCCCAAACCGTAGAAGCTCCTCAAGTTGGAGCTAACGGAAATGAAGATGACAGC 1366
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1441 AGCAGCTCCCAAACCGTAGAAGCTCGTCAAGTTGGCGCTAACGGAAATGAAGATGACAGC 1500
Query 1367 TGGCATTGACATCACATGTTCAGAAGCCTGCGTAAGGGATACtttttttCTTTACCATCA 1426
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1501 TGGCATTGACATCACATGTTGAGAAGCCTGCGTAAGGGATACTTTTTTTCTTTACCATGA 1560
Query 1427 TAGGCTTTTCAGTTTTTAGGATCAAACTCTTCTTTTGGCTTTGGAGTTTAT-AAAA-ACA 1484
|||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||| |||
Sbjct 1561 TAGGCTTTTCAGTTCTTAGGACCAAACTCTTCTTTTGGCTTTGGAATTTATGAAAACACA 1620
Query 1485 TTTAGGTAAATTATAGTCTCCAAACTACATCTATCTGGCAAGTCTGATGCTTGTTTACAG 1544
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1621 TTTAGGTAAATTATAGTCTCCAAACTACATCTATCTGGCAAGTCA-ATGCTTGTTTACAG 1679
Query 1545 AATTCTCACAC-AATAACTTTTCTC-TCCCGCTTTAACTGTAACTATCTACTCTTTCACT 1602
|||||||| | ||||||| | | | ||||||||||||||||||||||||||||||||
Sbjct 1680 GATTCTCAC-CTAATAACTACTGTTATGCCGCTTTAACTGTAACTATCTACTCTTTCACT 1738
Query 1603 AAGGTTCAGTCTAATGGAAGCATGTTCTGTTT 1634
|||||||| |||||||||||||||| ||||||
Sbjct 1739 AAGGTTCACTCTAATGGAAGCATGTCCTGTTT 1770
Score = 660 bits (357), Expect = 0.0
Identities = 445/483 (92%), Gaps = 24/483 (5%)
Strand=Plus/Plus
Query 1 TGATTTGATCTTCTCTTCTCGGTTGAAATTAGGGATTTCTGTAAAATTGTAATGTGATTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 84 TGATTTGATCTTCTCTTCTCGGTTGAAATTAGGGATTTCTGTAAAATTGTAATGTG-TTT 142
Query 61 -TGAGTAAATCATGAGCAAGCCCGAAGATATTTCCGACCCGAATCCAACCGGACCCGATC 119
||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 143 CTGAGTAAATCATGAGCAAGCCCGAAGAAACTTCCGACCCGAACCCAACCGGACCCGATC 202
Query 120 CGTCTCGATCTTCCTCCGATGAGGTCACCGTCACCGTCGCCGATCAGGCTCCGTCTGATC 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 203 CGTCTCGATCTTCCTCCGATGAGGTCACCGTCACCGTCGCCGATCGGGCTCCGTCTGATC 262
Query 180 TCAATCACGTTTCTGAGGAGCTAAGTGATCAATTCAGGAATGTGGCTTTGGATGATTCTG 239
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 263 TCAATCACGTTTCTGAGGAGCTAAGTGATCAATTGAGGAATGTGGGTTTGGATGATTCTG 322
Query 240 CGAAAGAGCTGAGTGTTCCGATTAGTGTC----AA--T---GTAGAAACGGATTCGAGGG 290
||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 323 CGAAAGAGCTGAGTGTTCCGATTAGTGTCCCTCAAGGTAATGTAGAAACGGATTCGAGGG 382
Query 291 CATTA---GGCAGCGATCAAAAGGAGGAAGAAGAGCGTGAGAGTATGATTGAGAAGAGAA 347
||||| |||||||||||||||||||||||||| | | ||| || || | |||||
Sbjct 383 CATTATTCGGCAGCGATCAAAAGGAGGAAGAAGAA-G-G-GAGC--GA--GA-A-GAGAA 433
Query 348 TGATGGTGGTGTATCCAGTGAGACCTGACGCAGAGGATTGTTCGTTTTATATGAGAACAG 407
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 434 TGATGATGGTGTATCCAGTGAGACCTGATTCAGAGGATTGTTCGTTTTATATGAGAACTG 493
Query 408 GAAGCTGCAAATACGGATCAAGTTGCAAGTTCAATCACCCTCTTCGAAGGAAACTTCAA- 466
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 494 GAAGCTGCAAATACGGATCAAGTTGCAAGTTCAATCACCCTGTTCGCAGGAAACTTCAAG 553
Query 467 ATT 469
|||
Sbjct 554 ATT 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80722476360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5